Evidence map›Paper›PMID 25552480›Full record

ArticleThe Journal of biological chemistry2015

High-affinity DNA-binding domains of replication protein A (RPA) direct SMARCAL1-dependent replication fork remodeling.

Kamakoti P Bhat, Rémy Bétous, David Cortez

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. The Zinc Finger Ran-Binding Protein 3 (ZRANB3): An Advanced Perspective.International journal of molecular sciences · 2026
    Review
  3. Article
  4. HeterozygousGenes & development · 2024
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Telomeres and Cancer.Life (Basel, Switzerland) · 2021
    Review
  18. Article
  19. Review
  20. Making Choices: DNA Replication Fork Recovery Mechanisms.Seminars in cell & developmental biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Kamakoti P BhatFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232.
Rémy BétousFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232.
David CortezFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 david.cortez@vanderbilt.edu.
Vanderbilt University · USCNR de la Résistance aux Antibiotiques · FR

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Functional Analysis of Replication Stress Response ProteinsR01CA136933 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2009 to 2013
$1.6M
Molecular mechanism of necroptosis mediated by mixed lineage kinase-like (MLKL) proteinR01GM160432 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Jianbin Ruan · 2026 to 2026
$429k
NCI NIH HHS P01 CA092584NCI NIH HHS P01CA092584NCI NIH HHS R01 CA136933NCI NIH HHS R01CA136933NIGMS NIH HHS R01GM160432
6 · The paper itself

Abstract

SMARCAL1 catalyzes replication fork remodeling to maintain genome stability. It is recruited to replication forks via an interaction with replication protein A (RPA), the major ssDNA-binding protein in eukaryotic cells. In addition to directing its localization, RPA also activates SMARCAL1 on some fork substrates but inhibits it on others, thereby conferring substrate specificity to SMARCAL1 fork-remodeling reactions. We investigated the mechanism by which RPA regulates SMARCAL1. Our results indicate that although an interaction between SMARCAL1 and RPA is essential for SMARCAL1 activation, the location of the interacting surface on RPA is not. Counterintuitively, high-affinity DNA binding of RPA DNA-binding domain (DBD) A and DBD-B near the fork junction makes it easier for SMARCAL1 to remodel the fork, which requires removing RPA. We also found that RPA DBD-C and DBD-D are not required for SMARCAL1 regulation. Thus, the orientation of the high-affinity RPA DBDs at forks dictates SMARCAL1 substrate specificity.

Indexed as

DNA ReplicationAmino Acid MotifsBone NeoplasmsDNA DamageDNA HelicasesDNA, Single-StrandedElectrophoretic Mobility Shift AssayHumansOsteosarcomaProtein BindingReplication Protein ASubstrate SpecificityTumor Cells, CulturedDNA HelicasesDNA, Single-StrandedReplication Protein ASMARCAL1 protein, humanATPaseDNA Damage ResponseDNA RepairDNA ReplicationFork RegressionGenomic InstabilityReplication Protein ASMARCAL1

Identifiers

PMID25552480
PMCPMC4326820
OpenAlexW1990538976

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.