Evidence map›Paper›PMID 25552416›Full record

ArticleNucleic acids research2015

A modular system of DNA enhancer elements mediates tissue-specific activation of transcription by high dietary zinc in C. elegans.

Hyun Cheol Roh, Ivan Dimitrov, Krupa Deshmukh, Guoyan Zhao, Kurt Warnhoff, Daniel Cabrera, Wendy Tsai, Kerry Kornfeld

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 33 citations in OpenAlex.

  1. An atlas of thebioRxiv : the preprint server for biology · 2026
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  6. Lysosome-related organelles contain an expansion compartment that mediates delivery of zinc transporters to promote homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  11. Cadmium hijacks the high zinc response by binding and activating the HIZR-1 nuclear receptor.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Zinc homeostasis and signaling in the roundworm C. elegans.Biochimica et biophysica acta. Molecular cell research · 2021
    Review
  13. How affinity of the ELT-2 GATA factor binding toDevelopment (Cambridge, England) · 2020
    Article
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  20. Zinc availability during germline development impacts embryo viability in Caenorhabditis elegans.Comparative biochemistry and physiology. Toxicology & pharmacology : CBP · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hyun Cheol RohDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Ivan DimitrovDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Krupa DeshmukhDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Guoyan ZhaoDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Kurt WarnhoffDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Daniel CabreraDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Wendy TsaiDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Kerry KornfeldDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO 63110, USA kornfeld@wustl.edu.
Washington University in St. Louis · US

Funding

TRANSCRIPTIONAL REGULATION OF ZINC HOMEOSTASISR01GM068598 · NIGMS · WASHINGTON UNIVERSITY · PI KORNFELD, KERRY · 2003 to 2025
$5.3M
NIGMS NIH HHS GM068598NIGMS NIH HHS R01 GM068598
6 · The paper itself

Abstract

Zinc is essential for biological systems, and aberrant zinc metabolism is implicated in a broad range of human diseases. To maintain homeostasis in response to fluctuating levels of dietary zinc, animals regulate gene expression; however, mechanisms that mediate the transcriptional response to fluctuating levels of zinc have not been fully defined. Here, we identified DNA enhancer elements that mediate intestine-specific transcriptional activation in response to high levels of dietary zinc in C. elegans. Using bioinformatics, we characterized an evolutionarily conserved enhancer element present in multiple zinc-inducible genes, the high zinc activation (HZA) element. The HZA was consistently adjacent to a GATA element that mediates expression in intestinal cells. Functional studies using transgenic animals demonstrated that this modular system of DNA enhancers mediates tissue-specific transcriptional activation in response to high levels of dietary zinc. We used this information to search the genome and successfully identified novel zinc-inducible genes. To characterize the mechanism of enhancer function, we demonstrated that the GATA transcription factor ELT-2 and the mediator subunit MDT-15 are necessary for zinc-responsive transcriptional activation. These findings define new mechanisms of zinc homeostasis and tissue-specific regulation of transcription.

Indexed as

Enhancer Elements, GeneticTranscriptional ActivationAnimalsBase SequenceCadmiumCaenorhabditis elegansCaenorhabditis elegans ProteinsConserved SequenceDNA, HelminthGATA Transcription FactorsOrgan SpecificityPromoter Regions, GeneticTranscription FactorsZincCadmiumCaenorhabditis elegans ProteinsDNA, HelminthELT-2 protein, C elegansGATA Transcription FactorsMDT-15 protein, C elegansTranscription FactorsZinc

Identifiers

PMID25552416
PMCPMC4333406
OpenAlexW2154750171

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.