Evidence map›Paper›PMID 25551153›Full record

SynthesisJournal of the Royal Society, Interface2015

β-Catenin is central to DUX4-driven network rewiring in facioscapulohumeral muscular dystrophy.

Christopher R S Banerji, Paul Knopp, Louise A Moyle, Simone Severini, Richard W Orrell, Andrew E Teschendorff, Peter S Zammit

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Journal of the Royal Society, Interface, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 2 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 2 syntheses or guidelines pooled it, 68 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Christopher R S Banerji
Paul Knopp
Louise A Moyle
Simone Severini
Richard W Orrell
Andrew E Teschendorff
Peter S Zammit
King's College London · GBUniversity College London · GBRoland Hill (United Kingdom) · GBShanghai Institutes for Biological Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy (FSHD) is an incurable disease, characterized by skeletal muscle weakness and wasting. Genetically, FSHD is characterized by contraction or hypomethylation of repeat D4Z4 units on chromosome 4, which causes aberrant expression of the transcription factor DUX4 from the last repeat. Many genes have been implicated in FSHD pathophysiology, but an integrated molecular model is currently lacking. We developed a novel differential network methodology, Interactome Sparsification and Rewiring (InSpiRe), which detects network rewiring between phenotypes by integrating gene expression data with known protein interactions. Using InSpiRe, we performed a meta-analysis of multiple microarray datasets from FSHD muscle biopsies, then removed secondary rewiring using non-FSHD datasets, to construct a unified network of rewired interactions. Our analysis identified β-catenin as the main coordinator of FSHD-associated protein interaction signalling, with pathways including canonical Wnt, HIF1-α and TNF-α clearly perturbed. To detect transcriptional changes directly elicited by DUX4, gene expression profiling was performed using microarrays on murine myoblasts. This revealed that DUX4 significantly modified expression of the genes in our FSHD network. Furthermore, we experimentally confirmed that Wnt/β-catenin signalling is affected by DUX4 in murine myoblasts. Thus, we provide the first unified molecular map of FSHD signalling, capable of uncovering pathomechanisms and guiding therapeutic development.

Indexed as

Gene Expression RegulationAlgorithmsAnimalsbeta CateninBiopsyGene Expression ProfilingHomeodomain ProteinsHumansHypoxia-Inducible Factor 1, alpha SubunitMAP Kinase Kinase 4MiceModels, BiologicalModels, StatisticalMusclesMuscular Dystrophy, FacioscapulohumeralMyoblastsbeta CateninCTNNB1 protein, mouseDux4 protein, mouseHif1a protein, mouseHomeodomain ProteinsHypoxia-Inducible Factor 1, alpha SubunitMAP Kinase Kinase 4Reactive Oxygen SpeciesRNA, Messenger

Identifiers

PMID25551153
PMCPMC4277075
OpenAlexW1980673678

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.