Evidence map›Paper›PMID 25550437›Full record

ArticleNucleic acids research2015

NFATc2 mediates epigenetic modification of dendritic cell cytokine and chemokine responses to dectin-1 stimulation.

Hong-Bing Yu, Marina Yurieva, Akhila Balachander, Ivy Foo, Xiangrong Leong, Teresa Zelante, Francesca Zolezzi, Michael Poidinger, Paola Ricciardi-Castagnoli

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 39 citations in OpenAlex.

  1. DNA methylation is associated with inhaled corticosteroid response in persistent childhood asthmatics.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2019
    Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Sensing the gut microbiota.Nature immunology · 2020
    Article
  8. Review
  9. Article
  10. Article
  11. Frontiers in immunology · 2020
    Article
  12. Article
  13. Alteration of gene expression profile in CD3ImmunoTargets and therapy · 2018
    Article
  14. Leucine-Rich Repeat Kinase 2 Controls the CaFrontiers in immunology · 2018
    Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Hong-Bing YuSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore yu_hong_bing@immunol.a-star.edu.sg.
Marina YurievaSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore.
Akhila BalachanderSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore.
Ivy FooSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore.
Xiangrong LeongSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore.
Teresa ZelanteSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore.
Francesca ZolezziSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore.
Michael PoidingerSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore.
Paola Ricciardi-CastagnoliSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*Star), Biopolis, Singapore paola.castagnoli@gmail.com.
Agency for Science, Technology and Research · SGSingapore Immunology Network · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transcription factor NFATc2 regulates dendritic cell (DC) responses to microbial stimulation through the C-type lectin receptor dectin-1. But the genetic targets of NFATc2 and their effects on DC function remain largely unknown. Therefore we used ChIP-seq to conduct genome-wide mapping of NFATc2 target sites in dectin-1-activated DCs. By combining binding-site data with a comprehensive gene expression profile, we found that NFATc2 occupancy regulates the expression of a subset of dectin-1-activated genes. Surprisingly, NFATc2 targeted an extensive range of DC-derived cytokines and chemokines, including regulatory cytokines such as IL2, IL23a and IL12b. Furthermore, we demonstrated that NFATc2 binding is required to induce the histone 3 lysine 4 trimethylation (H3K4me3) epigenetic mark, which is associated with enhanced gene expression. Together, these data show that the transcription factor NFATc2 mediates epigenetic modification of DC cytokine and chemokine genes leading to activation of their expression.

Indexed as

Epigenesis, GeneticTranscriptional ActivationAnimalsBinding SitesCell LineCells, CulturedChemokinesCytokinesDectin-1Dendritic CellsHistonesLectins, C-TypeMiceMice, Inbred C57BLNFATC Transcription FactorsTranscription Initiation SiteChemokinesCytokinesDectin-1HistonesLectins, C-TypeNFATC Transcription Factors

Identifiers

PMID25550437
PMCPMC4333412
OpenAlexW2123490898

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.