Evidence map›Paper›PMID 25549777›Full record

ArticleAnnals of biomedical engineering2015

Automatic Classification and Quantification of Cell Adhesion Locations on the Endothelium.

Jie Wei, Bin Cai, Lin Zhang, Bingmei M Fu

Abstract read
In one paragraph

Article in Annals of biomedical engineering, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. A constrained linear regression optimization algorithm for diaphragm motion tracking with cone beam CT projections.Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB) · 2018
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jie WeiDepartment of Computer Science, The City College of New York, 160 Convent Ave, New York, NY, 10031, USA, wei@cs.ccny.cuny.edu.
Bin Cai
Lin Zhang
Bingmei M Fu
City College of New York · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Training and Career Development CoreU54CA132378 · NCI · CITY COLLEGE OF NEW YORK · PI Tim Alan Ahles, ADRIANA ESPINOSA · 2008 to 2026
$28.9M
Training and Career Development and Education CoreU54CA137788 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Daniel Alan Heller · 2008 to 2026
$28.1M
Tumor Cell Arrest and Adhesion in the MicrocirculationSC1CA153325 · NCI · CITY COLLEGE OF NEW YORK · PI FU, BINGMEI M. · 2010 to 2014
$750k
NCI NIH HHS CA153325-01NCI NIH HHS P30 CA008748NCI NIH HHS SC1 CA153325NCI NIH HHS U54 CA132378NCI NIH HHS U54CA132378-06NCI NIH HHS U54 CA137788NCI NIH HHS U54CA137788-01
6 · The paper itself

Abstract

To target tumor hematogenous metastasis and to understand how leukocytes cross the microvessel wall to perform immune functions, it is necessary to elucidate the adhesion location and transmigration pathway of tumor cells and leukocytes on/across the endothelial cells forming the microvessel wall. We developed an algorithm to classify and quantify cell adhesion locations from photomicrographs taken from the experiments of tumor cell/leukocyte adhesion in individual microvessels. The first step is to identify the microvessel by a novel gravity-field dynamic programming (DP) procedure. Next, an anisotropic image smoothing suppresses noises without unduly mitigating crucial visual features. After an adaptive thresholding process further tackles uneven lighting conditions during the imaging process, a series of local mathematical morphological operators and eigenanalysis identify tumor cells or leukocytes. Finally, a novel double component labeling procedure categorizes the cell adhesion locations. This algorithm has generated consistently encouraging performances on photomicrographs obtained from in vivo experiments for tumor cell and leukocyte adhesion locations on the endothelium forming the microvessel wall. Compared with human experts, this algorithm used 1/500-1/200 of the time without having the errors due to human subjectivity. Our automatic classification and quantification method provides a reliable and cost effective approach for biomedical image processing.

Indexed as

AlgorithmsAnimalsCell AdhesionEndothelium, VascularHumansImage Processing, Computer-AssistedLeukocytesNeoplasms

Identifiers

PMID25549777
PMCPMC4490140
OpenAlexW1989091929

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.