Evidence map›Paper›PMID 25549550›Full record

ArticleJournal of neuroscience methods2015

SWDreader: a wavelet-based algorithm using spectral phase to characterize spike-wave morphological variation in genetic models of absence epilepsy.

C D Richard, A Tanenbaum, B Audit, A Arneodo, A Khalil, W N Frankel

Open access · greenAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

C D RichardThe Jackson Laboratory, Bar Harbor, ME 04609 USA; Graduate School for Biomedical Sciences and Engineering, University of Maine, Orono, ME 04469 USA. Electronic address: lifepupil@gmail.com.
A TanenbaumDepartment of Neurology, School of Medicine, Washington University, St. Louis, MO 63130 USA; CompuMAINE Lab, Department of Mathematics, University of Maine, Orono, ME 04469 USA.
B AuditLaboratoire de Physique, CNRS UMR 5672, Université de Lyon, École Normale Supérieure de Lyon, F-69007 Lyon, France.
A ArneodoLaboratoire de Physique, CNRS UMR 5672, Université de Lyon, École Normale Supérieure de Lyon, F-69007 Lyon, France.
A KhalilThe Jackson Laboratory, Bar Harbor, ME 04609 USA; Graduate School for Biomedical Sciences and Engineering, University of Maine, Orono, ME 04469 USA; CompuMAINE Lab, Department of Mathematics, University of Maine, Orono, ME 04469 USA.
W N FrankelThe Jackson Laboratory, Bar Harbor, ME 04609 USA; Graduate School for Biomedical Sciences and Engineering, University of Maine, Orono, ME 04469 USA; Tufts University School of Medicine, Sackler School, Boston, MA 02111 USA.
University of Maine · USLaboratoire de Physique de l'ENS de Lyon · FRUniversité Claude Bernard Lyon 1 · FRWashington University in St. Louis · US

Funding

GENETIC DETERMINANTS OF EPILEPSY IN MURINE SYSTEMSR01NS031348 · NINDS · JACKSON LABORATORY · PI SANDS, TRISTAN T · 1993 to 2025
$11.5M
Genetic Determinants of Epilepsy in Murine SystemsR37NS031348 · NINDS · JACKSON LABORATORY · PI FRANKEL, WAYNE N. · 2014 to 2020
$5.8M
NINDS NIH HHS NS031348NINDS NIH HHS R01 NS031348NINDS NIH HHS R37 NS031348
6 · The paper itself

Abstract

backgroundSpike-wave discharges (SWD) found in neuroelectrical recordings are pathognomonic to absence epilepsy. The characteristic spike-wave morphology of the spike-wave complex (SWC) constituents of SWDs can be mathematically described by a subset of possible spectral power and phase values. Morlet wavelet transform (MWT) generates time-frequency representations well-suited to identifying this SWC-associated subset. NEW

methodMWT decompositions of SWDs reveal spectral power concentrated at harmonic frequencies. The phase relationships underlying SWC morphology were identified by calculating the differences between phase values at SWD fundamental frequency from the 2nd, 3rd, and 4th harmonics, then using the three phase differences as coordinates to generate a density distribution in a {360°×360°×360°} phase difference space. Strain-specific density distributions were generated from SWDs of mice carrying the Gria4, Gabrg2, or Scn8a mutations to determine whether SWC morphological variants reliably mapped to the same regions of the distribution, and if distribution values could be used to detect SWD. COMPARISON WITH EXISTING

methodsTo the best of our knowledge, this algorithm is the first to employ spectral phase to quantify SWC morphology, making it possible to computationally distinguish SWC morphological subtypes and detect SWDs. RESULTS/

conclusionsProof-of-concept testing of the SWDfinder algorithm shows: (1) a major pattern of variation in SWC morphology maps to one axis of the phase difference distribution, (2) variability between the strain-specific distributions reflects differences in the proportions of SWC subtypes generated during SWD, and (3) regularities in the spectral power and phase profiles of SWCs can be used to detect waveforms possessing SWC-like morphology.

Indexed as

AlgorithmsWavelet AnalysisAnimalsBrainDisease Models, AnimalElectroencephalographyEpilepsy, AbsenceMice, Inbred C3HMice, TransgenicMutationSeizuresAbsence epilepsyFundamental frequencyHarmonic analysisMorlet wavelet transformMorphologyMouse mutantPhase differencesSeizure detection algorithmSpike-wave complexSpike-wave discharge

Identifiers

PMID25549550
PMCPMC4331221
OpenAlexW1985550620

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.