Evidence map›Paper›PMID 25549107›Full record

ArticleJournal of visualized experiments : JoVE2014

Simultaneous quantification of T-cell receptor excision circles (TRECs) and K-deleting recombination excision circles (KRECs) by real-time PCR.

Alessandra Sottini, Federico Serana, Diego Bertoli, Marco Chiarini, Monica Valotti, Marion Vaglio Tessitore, Luisa Imberti

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. First pilot study for newborn screening of severe T and B lymphopenias in ColombiaBiomedica : revista del Instituto Nacional de Salud · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Novel biallelicGenes & diseases · 2020
    Article
  14. Article
  15. Article
  16. Naive B Cell Output in HIV-Infected and HIV-Uninfected Children.AIDS research and human retroviruses · 2019
    Article
  17. Thymic involution and rising disease incidence with age.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Alessandra SottiniCREA, Diagnostics Department, Spedali Civili di Brescia.
Federico SeranaCREA, Diagnostics Department, Spedali Civili di Brescia.
Diego BertoliCREA, Diagnostics Department, Spedali Civili di Brescia.
Marco ChiariniCREA, Diagnostics Department, Spedali Civili di Brescia.
Monica ValottiCREA, Diagnostics Department, Spedali Civili di Brescia.
Marion Vaglio TessitoreCREA, Diagnostics Department, Spedali Civili di Brescia.
Luisa ImbertiCREA, Diagnostics Department, Spedali Civili di Brescia; luisa.imberti@spedalicvili.brescia.it.
Azienda Socio Sanitaria Territoriale degli Spedali Civili di Brescia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

T-cell receptor excision circles (TRECs) and K-deleting recombination excision circles (KRECs) are circularized DNA elements formed during recombination process that creates T- and B-cell receptors. Because TRECs and KRECs are unable to replicate, they are diluted after each cell division, and therefore persist in the cell. Their quantity in peripheral blood can be considered as an estimation of thymic and bone marrow output. By combining well established and commonly used TREC assay with a modified version of KREC assay, we have developed a duplex quantitative real-time PCR that allows quantification of both newly-produced T and B lymphocytes in a single assay. The number of TRECs and KRECs are obtained using a standard curve prepared by serially diluting TREC and KREC signal joints cloned in a bacterial plasmid, together with a fragment of T-cell receptor alpha constant gene that serves as reference gene. Results are reported as number of TRECs and KRECs/10(6) cells or per ml of blood. The quantification of these DNA fragments have been proven useful for monitoring immune reconstitution following bone marrow transplantation in both children and adults, for improved characterization of immune deficiencies, or for better understanding of certain immunomodulating drug activity.

Indexed as

AdolescentAdultBase SequenceB-LymphocytesChildChild, PreschoolDNA, CircularFemaleHumansMiddle AgedMolecular Sequence DataReal-Time Polymerase Chain ReactionReceptors, Antigen, T-CellRecombination, GeneticT-LymphocytesYoung AdultDNA, CircularReceptors, Antigen, T-Cell

Identifiers

PMID25549107
PMCPMC4396956
OpenAlexW2076445283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.