Evidence map›Paper›PMID 25549104›Full record

ArticlePLoS biology2014

Structured inquiry-based learning: Drosophila GAL4 enhancer trap characterization in an undergraduate laboratory course.

Christopher R Dunne, Anthony R Cillo, Danielle R Glick, Katherine John, Cody Johnson, Jaspinder Kanwal, Brian T Malik, Kristina Mammano, Stefan Petrovic, William Pfister and 14 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 1 institution in 1 country.

Christopher R DunneNeuroscience Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Anthony R CilloCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Danielle R GlickCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Katherine JohnCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Cody JohnsonCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Jaspinder KanwalCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Brian T MalikCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Kristina MammanoCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Stefan PetrovicCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
William PfisterCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Alexander S RascoeCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Diane SchromCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Scott ShapiroCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Jeffrey W SimkinsCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
David StraussCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Rene TalaiCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
John P TomtishenCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Josephine VargasCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Tony VelozCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Thomas O VoglerCell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Michael E ClenshawBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Devin T Gordon-HammNeuroscience Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Kathryn L LeeNeuroscience Program, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Elizabeth C MarinNeuroscience Program, Bucknell University, Lewisburg, Pennsylvania, United States of America; Cell Biology/Biochemistry Program, Bucknell University, Lewisburg, Pennsylvania, United States of America; Biology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Bucknell University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have developed and tested two linked but separable structured inquiry exercises using a set of Drosophila melanogaster GAL4 enhancer trap strains for an upper-level undergraduate laboratory methods course at Bucknell University. In the first, students learn to perform inverse PCR to identify the genomic location of the GAL4 insertion, using FlyBase to identify flanking sequences and the primary literature to synthesize current knowledge regarding the nearest gene. In the second, we cross each GAL4 strain to a UAS-CD8-GFP reporter strain, and students perform whole mount CNS dissection, immunohistochemistry, confocal imaging, and analysis of developmental expression patterns. We have found these exercises to be very effective in teaching the uses and limitations of PCR and antibody-based techniques as well as critical reading of the primary literature and scientific writing. Students appreciate the opportunity to apply what they learn by generating novel data of use to the wider research community.

Indexed as

CurriculumEnhancer Elements, GeneticLaboratoriesLearningUniversitiesAnimalsBase SequenceBrainDrosophila melanogasterDrosophila ProteinsGene Expression RegulationGenes, InsectMolecular Sequence DataMushroom BodiesPolymerase Chain ReactionTranscription FactorsDrosophila ProteinsGAL4 protein, DrosophilaTranscription Factors

Identifiers

PMID25549104
PMCPMC4280103
OpenAlexW2011317550

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.