Evidence map›Paper›PMID 25548925›Full record

ArticlePloS one2014

The transcription map of human papillomavirus type 18 during genome replication in U2OS cells.

Mart Toots, Andres Männik, Gaily Kivi, Mart Ustav, Ene Ustav, Mart Ustav

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. High-Risk Human Papillomavirus Oncogenic E6/E7 mRNAs Splicing Regulation.Frontiers in cellular and infection microbiology · 2022
    Review
  8. Article
  9. Article
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mart TootsInstitute of Technology, University of Tartu, Tartu, Tartumaa, Estonia.
Andres MännikIcosagen Cell Factory OÜ, Ülenurme vald, Tartumaa, Estonia.
Gaily KiviInstitute of Technology, University of Tartu, Tartu, Tartumaa, Estonia; Icosagen Cell Factory OÜ, Ülenurme vald, Tartumaa, Estonia.
Mart UstavInstitute of Technology, University of Tartu, Tartu, Tartumaa, Estonia.
Ene UstavEstonian Biocentre, Tartu, Tartumaa, Estonia.
Mart UstavInstitute of Technology, University of Tartu, Tartu, Tartumaa, Estonia; Icosagen Cell Factory OÜ, Ülenurme vald, Tartumaa, Estonia; Estonian Academy of Sciences, Tallinn, Harjumaa, Estonia.
Estonian Academy of Sciences · EEUniversity of Tartu · EE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human osteosarcoma cell line U2OS is useful for studying genome replication of human papillomavirus (HPVs) subtypes that belong to different phylogenetic genera. In this study, we defined the HPV18 transcription map in U2OS cells during transient replication, stable maintenance and vegetative amplification by identifying viral promoter regions, transcription polyadenylation and splicing sites during HPV18 genome replication. Mapping of the HPV18 transcription start sites in U2OS cells revealed five distinct promoter regions (P102, P520, P811, P1193 and P3000). With the exception of P3000, all of these regions have been previously identified during productive HPV18 infection. Collectively, the data suggest that U2OS cells are suitable for studying the replication and transcription properties of HPVs and to serve as a platform for conducting high-throughput drug screens to identify HPV replication inhibitors. In addition, we have identified mRNA species that are initiated from the promoter region P3000, which can encode two E2C regulator proteins that contain only the C-terminal hinge and DNA-binding and dimerization domains of E2. We show that these proteins regulate the initial amplification of HPV18 by modulating viral transcription. Moreover, we show that one of these proteins can act as a transcriptional activator of promoter P102.

Indexed as

Genome, ViralCell Line, TumorGene Expression ProfilingHuman papillomavirus 18HumansPolyadenylationPromoter Regions, GeneticRNA SplicingVirus Replication

Identifiers

PMID25548925
PMCPMC4280167
OpenAlexW2082392645

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.