Evidence map›Paper›PMID 25548050›Full record

ArticleApplied and environmental microbiology2015

A novel CO-responsive transcriptional regulator and enhanced H2 production by an engineered Thermococcus onnurineus NA1 strain.

Min-Sik Kim, Ae Ran Choi, Seong Hyuk Lee, Hae-Chang Jung, Seung Seob Bae, Tae-Jun Yang, Jeong Ho Jeon, Jae Kyu Lim, Hwan Youn, Tae Wan Kim and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Min-Sik KimKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea.
Ae Ran ChoiKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea.
Seong Hyuk LeeKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea Department of Marine Biotechnology, Korea University of Science and Technology, Daejeon, Republic of Korea.
Hae-Chang JungKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea Department of Marine Biotechnology, Korea University of Science and Technology, Daejeon, Republic of Korea.
Seung Seob BaeKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea Department of Marine Biotechnology, Korea University of Science and Technology, Daejeon, Republic of Korea.
Tae-Jun YangKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea.
Jeong Ho JeonKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea.
Jae Kyu LimKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea.
Hwan YounDepartment of Biology, California State University, Fresno, California, USA.
Tae Wan KimKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea Department of Marine Biotechnology, Korea University of Science and Technology, Daejeon, Republic of Korea.
Hyun Sook LeeKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea Department of Marine Biotechnology, Korea University of Science and Technology, Daejeon, Republic of Korea leeh522@kiost.ac sgkang@kiost.ac.
Sung Gyun KangKorea Institute of Ocean Science and Technology, Ansan, Republic of Korea Department of Marine Biotechnology, Korea University of Science and Technology, Daejeon, Republic of Korea leeh522@kiost.ac sgkang@kiost.ac.
Korea Institute of Ocean Science and Technology · KRKorea University of Science and Technology · KRCalifornia State University, Fresno · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome analysis revealed the existence of a putative transcriptional regulatory system governing CO metabolism in Thermococcus onnurineus NA1, a carboxydotrophic hydrogenogenic archaeon. The regulatory system is composed of CorQ with a 4-vinyl reductase domain and CorR with a DNA-binding domain of the LysR-type transcriptional regulator family in close proximity to the CO dehydrogenase (CODH) gene cluster. Homologous genes of the CorQR pair were also found in the genomes of Thermococcus species and "Candidatus Korarchaeum cryptofilum" OPF8. In-frame deletion of either corQ or corR caused a severe impairment in CO-dependent growth and H2 production. When corQ and corR deletion mutants were complemented by introducing the corQR genes under the control of a strong promoter, the mRNA and protein levels of the CODH gene were significantly increased in a ΔCorR strain complemented with integrated corQR (ΔCorR/corQR(↑)) compared with those in the wild-type strain. In addition, the ΔCorR/corQR(↑) strain exhibited a much higher H2 production rate (5.8-fold) than the wild-type strain in a bioreactor culture. The H2 production rate (191.9 mmol liter(-1) h(-1)) and the specific H2 production rate (249.6 mmol g(-1) h(-1)) of this strain were extremely high compared with those of CO-dependent H2-producing prokaryotes reported so far. These results suggest that the corQR genes encode a positive regulatory protein pair for the expression of a CODH gene cluster. The study also illustrates that manipulation of the transcriptional regulatory system can improve biological H2 production.

Indexed as

Aldehyde OxidoreductasesCarbon MonoxideDNA, ArchaealGene DeletionGene Expression ProfilingGene Expression Regulation, ArchaealGenetic Complementation TestHydrogenMolecular Sequence DataMultienzyme ComplexesMultigene FamilySequence Analysis, DNAThermococcusTranscription FactorsAldehyde OxidoreductasesCarbon Monoxidecarbon monoxide dehydrogenaseDNA, ArchaealHydrogenMultienzyme ComplexesTranscription Factors

Identifiers

PMID25548050
PMCPMC4325145
OpenAlexW2128201660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.