Evidence map›Paper›PMID 25544751›Full record

ArticleOncotarget2015

SWI/SNF complexes are required for full activation of the DNA-damage response.

Stephanie L Smith-Roe, Jun Nakamura, Darcy Holley, Paul D Chastain, Gary B Rosson, Dennis A Simpson, John R Ridpath, David G Kaufman, William K Kaufmann, Scott J Bultman

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  7. Article
  8. Zinc finger protein E4F1 cooperates with PARP-1 and BRG1 to promote DNA double-strand break repair.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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  11. Cancers · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Stephanie L Smith-RoeDepartment of Genetics and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA.
Jun NakamuraDepartment of Environmental Sciences and Engineering, University of North Carolina, Chapel Hill, NC, USA.
Darcy HolleyDepartment of Genetics and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA.
Paul D ChastainDepartment of Biomedical Sciences, William Carey University, Hattiesburg, MS, USA.
Gary B RossonDepartment of Genetics and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA.
Dennis A SimpsonDepartment of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA.
John R RidpathDepartment of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA.
David G KaufmanDepartment of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA.
William K KaufmannDepartment of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA.
Scott J BultmanDepartment of Genetics and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA.
University of North Carolina at Chapel Hill · USUNC Lineberger Comprehensive Cancer CenterWilliam Carey University · US

Funding

STOCHASTIC ANALYSIS OF FLOW AND TRANSPORT PHENOMENAP42ES005948 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FRY, REBECCA · 1992 to 2017
$45.4M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
Dietary Fiber, Gut Microflora, & Epigenetic Events that Prevent Colorectal CancerR01CA125237 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BULTMAN, SCOTT J · 2007 to 2011
$1.4M
NCI NIH HHS CA125237NCI NIH HHS R01 CA125237NIEHS NIH HHS P30 ES010126NIEHS NIH HHS P30-ES10126NIEHS NIH HHS P42 ES005948NIEHS NIH HHS P42-ES05948
6 · The paper itself

Abstract

SWI/SNF complexes utilize BRG1 (also known as SMARCA4) or BRM (also known as SMARCA2) as alternative catalytic subunits with ATPase activity to remodel chromatin. These chromatin-remodeling complexes are required for mammalian development and are mutated in ~20% of all human primary tumors. Yet our knowledge of their tumor-suppressor mechanism is limited. To investigate the role of SWI/SNF complexes in the DNA-damage response (DDR), we used shRNAs to deplete BRG1 and BRM and then exposed these cells to a panel of 6 genotoxic agents. Compared to controls, the shRNA knockdown cells were hypersensitive to certain genotoxic agents that cause double-strand breaks (DSBs) associated with stalled/collapsed replication forks but not to ionizing radiation-induced DSBs that arise independently of DNA replication. These findings were supported by our analysis of DDR kinases, which demonstrated a more prominent role for SWI/SNF in the activation of the ATR-Chk1 pathway than the ATM-Chk2 pathway. Surprisingly, γH2AX induction was attenuated in shRNA knockdown cells exposed to a topoisomerase II inhibitor (etoposide) but not to other genotoxic agents including IR. However, this finding is compatible with recent studies linking SWI/SNF with TOP2A and TOP2BP1. Depletion of BRG1 and BRM did not result in genomic instability in a tumor-derived cell line but did result in nucleoplasmic bridges in normal human fibroblasts. Taken together, these results suggest that SWI/SNF tumor-suppressor activity involves a role in the DDR to attenuate replicative stress and genomic instability. These results may also help to inform the selection of chemotherapeutics for tumors deficient for SWI/SNF function.

Indexed as

DNA DamageCell Line, TumorCell SurvivalDNA HelicasesFemaleGene Knockdown TechniquesHeLa CellsHumansNuclear ProteinsRNA, Small InterferingTranscription FactorsUterine Cervical NeoplasmsDNA HelicasesNuclear ProteinsRNA, Small InterferingSMARCA2 protein, humanSMARCA4 protein, humanTranscription Factors

Identifiers

PMID25544751
PMCPMC4359251
OpenAlexW1944188907

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.