Evidence map›Paper›PMID 25544291›Full record

ArticleThe Journal of biological chemistry2015

The zebrafish period2 protein positively regulates the circadian clock through mediation of retinoic acid receptor (RAR)-related orphan receptor α (Rorα).

Mingyong Wang, Zhaomin Zhong, Yingbin Zhong, Wei Zhang, Han Wang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. CircadianZoological research · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Thousands of oscillating LncRNAs in the mouse testis.Computational and structural biotechnology journal · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Immunity, Infection, and the Zebrafish Clock.Infection and immunity · 2022
    Review
  17. Article
  18. REV-ERBα Agonist SR9009 Promotes a Negative Energy Balance in Goldfish.International journal of molecular sciences · 2022
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mingyong WangFrom the Center for Circadian Clocks and School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, Jiangsu, China.
Zhaomin ZhongFrom the Center for Circadian Clocks and School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, Jiangsu, China.
Yingbin ZhongFrom the Center for Circadian Clocks and School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, Jiangsu, China.
Wei ZhangFrom the Center for Circadian Clocks and School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, Jiangsu, China.
Han WangFrom the Center for Circadian Clocks and School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, Jiangsu, China han.wang88@gmail.com wanghan@suda.edu.cn.
Soochow University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the characterization of a null mutant for zebrafish circadian clock gene period2 (per2) generated by transcription activator-like effector nuclease and a positive role of PER2 in vertebrate circadian regulation. Locomotor experiments showed that per2 mutant zebrafish display reduced activities under light-dark and 2-h phase delay under constant darkness, and quantitative real time PCR analyses showed up-regulation of cry1aa, cry1ba, cry1bb, and aanat2 but down-regulation of per1b, per3, and bmal1b in per2 mutant zebrafish, suggesting that Per2 is essential for the zebrafish circadian clock. Luciferase reporter assays demonstrated that Per2 represses aanat2 expression through E-box and enhances bmal1b expression through the Ror/Rev-erb response element, implicating that Per2 plays dual roles in the zebrafish circadian clock. Cell transfection and co-immunoprecipitation assays revealed that Per2 enhances bmal1b expression through binding to orphan nuclear receptor Rorα. The enhancing effect of mouse PER2 on Bmal1 transcription is also mediated by RORα even though it binds to REV-ERBα. Moreover, zebrafish Per2 also appears to have tissue-specific regulatory roles in numerous peripheral organs. These findings help define the essential functions of Per2 in the zebrafish circadian clock and in particular provide strong evidence for a positive role of PER2 in the vertebrate circadian system.

Indexed as

AnimalsARNTL Transcription FactorsBlotting, WesternChromatin ImmunoprecipitationCircadian ClocksEmbryo, NonmammalianEye ProteinsImmunoenzyme TechniquesMiceMotor ActivityPeriod Circadian ProteinsReal-Time Polymerase Chain ReactionReceptors, Cytoplasmic and NuclearReceptors, Retinoic AcidResponse ElementsReverse Transcriptase Polymerase Chain ReactionARNTL Transcription FactorsEye Proteinsper2 protein, zebrafishPeriod Circadian ProteinsReceptors, Cytoplasmic and NuclearReceptors, Retinoic AcidRNA, Messengerroraa protein, zebrafishZebrafish ProteinsCircadian ClockGene RegulationPeriod2Rev-ErbAα (NR1D1)RorαTransgenicZebrafish

Identifiers

PMID25544291
PMCPMC4326843
OpenAlexW1979742015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.