Evidence map›Paper›PMID 25542255›Full record

ArticleBMC genomics2014

Analysis of the basal chordate Botryllus schlosseri reveals a set of genes associated with fertility.

Delany Rodriguez, Erin N Sanders, Kelsea Farell, Adam D Langenbacher, Daryl A Taketa, Michelle Rae Hopper, Morgan Kennedy, Andrew Gracey, Anthony W De Tomaso

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  3. Genotype-specific expression ofbioRxiv : the preprint server for biology · 2024
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  6. Vascular Aging in the Invertebrate Chordate,Frontiers in molecular biosciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Delany RodriguezDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA. drodriguez@lifesci.ucsb.edu.
Erin N SandersDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA. ensanders12@gmail.com.
Kelsea FarellDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA. kelsea_farrell@yahoo.com.
Adam D LangenbacherDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA. adam.langenbacher@lifesci.ucsb.edu.
Daryl A TaketaDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA. daryl.taketa@lifesci.ucsb.edu.
Michelle Rae HopperDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA. michellehopper@umail.ucsb.edu.
Morgan KennedyDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA. morgankennedy48@gmail.com.
Andrew GraceyDepartment of Marine Environmental Biology, University of Southern California, Los Angeles, CA, 90089, USA. gracey@usc.edu.
Anthony W De TomasoDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA. anthony.detomaso@lifesci.ucsb.edu.
University of California, Santa Barbara · USUniversity of Southern California · US

Funding

Spectral Laser Scanning Biological MicroscopeS10OD010610 · OD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI RAVEN, MARY A · 2012 to 2012
$429k
Genetic analysis of adult germline stem cell maintenance and homingF32GM108227 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI LANGENBACHER, ADAM · 2013 to 2014
$107k
NIA NIH HHS NIH R01-AG037699NIGMS NIH HHS F32 GM108227NIH HHS S10 OD010610NIH HHS S10OD010610
6 · The paper itself

Abstract

backgroundGonad differentiation is an essential function for all sexually reproducing species, and many aspects of these developmental processes are highly conserved among the metazoa. The colonial ascidian, Botryllus schlosseri is a chordate model organism which offers two unique traits that can be utilized to characterize the genes underlying germline development: a colonial life history and variable fertility. These properties allow individual genotypes to be isolated at different stages of fertility and gene expression can be characterized comprehensively.

resultsHere we characterized the transcriptome of both fertile and infertile colonies throughout blastogenesis (asexual development) using differential expression analysis. We identified genes (as few as 7 and as many as 647) regulating fertility in Botryllus at each stage of blastogenesis. Several of these genes appear to drive gonad maturation, as they are expressed by follicle cells surrounding both testis and oocyte precursors. Spatial and temporal expression of differentially expressed genes was analyzed by in situ hybridization, confirming expression in developing gonads.

conclusionWe have identified several genes expressed in developing and mature gonads in B. schlosseri. Analysis of genes upregulated in fertile animals suggests a high level of conservation of the mechanisms regulating fertility between basal chordates and vertebrates.

Indexed as

AnimalsFemaleFertilityHumansInfertilityMaleOvaryRNA, MessengerSequence Analysis, RNATestisUrochordataRNA, Messenger

Identifiers

PMID25542255
PMCPMC4523013
OpenAlexW1484424105

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.