Evidence map›Paper›PMID 25542004›Full record

ArticlePloS one2014

A snapshot of the hepatic transcriptome: ad libitum alcohol intake suppresses expression of cholesterol synthesis genes in alcohol-preferring (P) rats.

Jonathon D Klein, Jeremy B Sherrill, Gabriella M Morello, Phillip J San Miguel, Zhenming Ding, Suthat Liangpunsakul, Tiebing Liang, William M Muir, Lawrence Lumeng, Amy C Lossie

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Jonathon D KleinPurdue University Interdisciplinary Life Sciences Graduate Program, Purdue University, West Lafayette, IN, United States of America; Department of Animal Science, Purdue University, West Lafayette, IN, United States of America.
Jeremy B SherrillDepartment of Animal Science, Purdue University, West Lafayette, IN, United States of America.
Gabriella M MorelloDepartment of Animal Science, Purdue University, West Lafayette, IN, United States of America.
Phillip J San MiguelCore Facility, Purdue University, West Lafayette, IN, United States of America; Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, United States of America.
Zhenming DingDepartment of Psychiatry, Indiana University School of Medicine, Indianapolis, IN, United States of America.
Suthat LiangpunsakulDepartment of Medicine, Indiana University School of Medicine, Indianapolis, IN, United States of America.
Tiebing LiangDepartment of Medicine, Indiana University School of Medicine, Indianapolis, IN, United States of America.
William M MuirPurdue University Interdisciplinary Life Sciences Graduate Program, Purdue University, West Lafayette, IN, United States of America; Department of Animal Science, Purdue University, West Lafayette, IN, United States of America; Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, United States of America.
Lawrence LumengDepartment of Medicine, Indiana University School of Medicine, Indianapolis, IN, United States of America.
Amy C LossiePurdue University Interdisciplinary Life Sciences Graduate Program, Purdue University, West Lafayette, IN, United States of America; Department of Animal Science, Purdue University, West Lafayette, IN, United States of America; Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, United States of America.
Purdue University West Lafayette · USIndiana University – Purdue University Indianapolis · USIndiana University School of Medicine

Funding

Translational Research and Science Education (OUT)P60AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI Nicholas Joseph Grahame · 2003 to 2026
$45.5M
Rodents with Genetic Differences in Alcohol PreferenceR24AA015512 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2005 to 2014
$5.1M
Rodents with Genetic Differences in Alcohol PreferenceU24AA015512 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2015 to 2019
$2.7M
NCATS NIH HHS UL1TR00110801NIAAA NIH HHS P60 AA007611NIAAA NIH HHS P60 AA007611 24NIAAA NIH HHS R24 AA015512NIAAA NIH HHS R24 AA015512 06NIAAA NIH HHS R24 AA015512 06S1NIAAA NIH HHS U24 AA015512
6 · The paper itself

Abstract

Research is uncovering the genetic and biochemical effects of consuming large quantities of alcohol. One prime example is the J- or U-shaped relationship between the levels of alcohol consumption and the risk of atherosclerotic cardiovascular disease. Moderate alcohol consumption in humans (about 30 g ethanol/d) is associated with reduced risk of coronary heart disease, while abstinence and heavier alcohol intake is linked to increased risk. However, the hepatic consequences of moderate alcohol drinking are largely unknown. Previous data from alcohol-preferring (P) rats showed that chronic consumption does not produce significant hepatic steatosis in this well-established model. Therefore, free-choice alcohol drinking in P rats may mimic low risk or nonhazardous drinking in humans, and chronic exposure in P animals can illuminate the molecular underpinnings of free-choice drinking in the liver. To address this gap, we captured the global, steady-state liver transcriptome following a 23 week free-choice, moderate alcohol consumption regimen (∼ 7.43 g ethanol/kg/day) in inbred alcohol-preferring (iP10a) rats. Chronic consumption led to down-regulation of nine genes in the cholesterol biosynthesis pathway, including HMG-CoA reductase, the rate-limiting step for cholesterol synthesis. These findings corroborate our phenotypic analyses, which indicate that this paradigm produced animals whose hepatic triglyceride levels, cholesterol levels and liver histology were indistinguishable from controls. These findings explain, at least in part, the J- or U-shaped relationship between cardiovascular risk and alcohol intake, and provide outstanding candidates for future studies aimed at understanding the mechanisms that underlie the salutary cardiovascular benefits of chronic low risk and nonhazardous alcohol intake.

Indexed as

Acyl Coenzyme AAlcohol DrinkingAnimalsBehavior, AnimalChoice BehaviorCholesterolDisease Models, AnimalDown-RegulationEthanolFemaleGene Expression ProfilingHumansLiverMolecular Sequence DataRatsSequence Analysis, RNA3-hydroxy-3-methylglutaryl-coenzyme AAcyl Coenzyme ACholesterolEthanol

Identifiers

PMID25542004
PMCPMC4277277
OpenAlexW2083222931

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.