Evidence map›Paper›PMID 25541555›Full record

ArticleMedical mycology2015

Generation of stable mutants and targeted gene deletion strains in Cryptococcus neoformans through electroporation.

Xiaorong Lin, Nadia Chacko, Linqi Wang, Yashwant Pavuluri

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Medical mycology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Xiaorong LinDepartment of Biology, Texas A&M University, College Station, Texas, USA xlin@bio.tamu.edu.
Nadia ChackoDepartment of Biology, Texas A&M University, College Station, Texas, USA.
Linqi WangDepartment of Biology, Texas A&M University, College Station, Texas, USA.
Yashwant PavuluriDepartment of Biology, Texas A&M University, College Station, Texas, USA.
Texas A&M University · US

Funding

The link between dimorphism and virulence in CryptococcusR01AI097599 · NIAID · UNIVERSITY OF GEORGIA · PI LIN, XIAORONG · 2012 to 2016
$1.8M
Investigate the multifunctional adhesins in CryptococcusR21AI107138 · NIAID · TEXAS A&M UNIVERSITY · PI LIN, XIAORONG · 2013 to 2014
$371k
NIAID NIH HHS R01 AI097599NIAID NIH HHS R01AI097599NIAID NIH HHS R21 AI107138NIAID NIH HHS R21AI107138
6 · The paper itself

Abstract

Cryptococcus neoformans is the etiologic agent of cryptococcal meningitis that causes more than half a million deaths worldwide each year. This capsulated basidiomycetous yeast also serves as a model for micropathogenic studies. The ability to make stable mutants, either via ectopic integration or homologous recombination, has been accomplished using biolistic transformation. This technical advance has greatly facilitated the research on the basic biology and pathogenic mechanisms of this pathogen in the past two decades. However, biolistic transformation is costly, and its reproducibility varies widely. Here we found that stable ectopic integration or targeted gene deletion via homologous replacement could be accomplished through electroporative transformation. The stability of the transformants obtained through electroporation and the frequency of homologous replacement is highly dependent on the selective marker. A frequency of homologous recombination among the stable transformants obtained by electroporation is comparable to those obtained by biolistic transformation (∼10%) when dominant drug selection markers are used, which is much higher than what has been previously reported for electroporation when auxotrophic markers were used (0.001% to 0.1%). Furthermore, disruption of the KU80 gene or generation of gene deletion constructs using the split marker strategy, two approaches known to increase homologous replacement among transformants obtained through biolistic transformation, also increase the frequency of homologous replacement among transformants obtained through electroporation. Therefore, electroporation provides a low cost alternative for mutagenesis in Cryptococcus.

Indexed as

Gene DeletionCryptococcus neoformansElectroporationGene Knockout TechniquesGenetics, MicrobialGenomic InstabilityHomologous RecombinationCryptococcus neoformansdominant markersectopic integrationelectroporationgene disruptiontransformation

Identifiers

PMID25541555
PMCPMC4574871
OpenAlexW2001999711

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.