Evidence map›Paper›PMID 25541197›Full record

ArticleNucleic acids research2015

Creating a monomeric endonuclease TALE-I-SceI with high specificity and low genotoxicity in human cells.

Jianfei Lin, He Chen, Ling Luo, Yongrong Lai, Wei Xie, Kehkooi Kee

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Beyond editing to writing large genomes.Nature reviews. Genetics · 2017
    Article
  8. Article
  9. Genome-Editing Technologies: Principles and Applications.Cold Spring Harbor perspectives in biology · 2016
    Review
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Jianfei LinCollege of Life Sciences, Peking University, Beijing 100871, China Center for Stem Cell Biology and Regenerative Medicine, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing 100084, China Tsinghua-Peking-NIBS Center for Life Sciences, School of Medicine, Tsinghua University, Beijing 100084, China.
He ChenCollege of Life Sciences, Peking University, Beijing 100871, China.
Ling LuoDepartment of Hematology, the First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, China.
Yongrong LaiDepartment of Hematology, the First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, China.
Wei XieTHU-PKU Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Kehkooi KeeCenter for Stem Cell Biology and Regenerative Medicine, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing 100084, China Tsinghua-Peking-NIBS Center for Life Sciences, School of Medicine, Tsinghua University, Beijing 100084, China kkee@tsinghua.edu.cn.
Center for Life Sciences · CNPeking University · CNFirst Affiliated Hospital of GuangXi Medical University · CNGuangxi Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To correct a DNA mutation in the human genome for gene therapy, homology-directed repair (HDR) needs to be specific and have the lowest off-target effects to protect the human genome from deleterious mutations. Zinc finger nucleases, transcription activator-like effector nuclease (TALEN) and CRISPR-CAS9 systems have been engineered and used extensively to recognize and modify specific DNA sequences. Although TALEN and CRISPR/CAS9 could induce high levels of HDR in human cells, their genotoxicity was significantly higher. Here, we report the creation of a monomeric endonuclease that can recognize at least 33 bp by fusing the DNA-recognizing domain of TALEN (TALE) to a re-engineered homing endonuclease I-SceI. After sequentially re-engineering I-SceI to recognize 18 bp of the human β-globin sequence, the re-engineered I-SceI induced HDR in human cells. When the re-engineered I-SceI was fused to TALE (TALE-ISVB2), the chimeric endonuclease induced the same HDR rate at the human β-globin gene locus as that induced by TALEN, but significantly reduced genotoxicity. We further demonstrated that TALE-ISVB2 specifically targeted at the β-globin sequence in human hematopoietic stem cells. Therefore, this monomeric endonuclease has the potential to be used in therapeutic gene targeting in human cells.

Indexed as

Targeted Gene Repairbeta-GlobinsCell LineCells, CulturedCRISPR-Cas SystemsDNA-Binding ProteinsEndodeoxyribonucleasesGenome, HumanHematopoietic Stem CellsHumansProtein EngineeringProtein Structure, TertiaryRecombinant Fusion ProteinsRecombinational DNA Repairbeta-GlobinsDNA-Binding ProteinsEndodeoxyribonucleasesRecombinant Fusion Proteins

Identifiers

PMID25541197
PMCPMC4333390
OpenAlexW2080711889

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.