Evidence map›Paper›PMID 25540652›Full record

ArticleFrontiers in genetics2014

An integrative assessment to determine the genotoxic hazard of estuarine sediments: combining cell and whole-organism responses.

Pedro M Costa, Miguel Pinto, Ana M Vicente, Cátia Gonçalves, Ana P Rodrigo, Henriqueta Louro, Maria H Costa, Sandra Caeiro, Maria J Silva

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

  1. DNA Damage Induced by T-2 Mycotoxin in Human Skin Fibroblast Cell Line-Hs68.International journal of molecular sciences · 2023
    Article
  2. Article
  3. Review
  4. Article
  5. The comet assay: past, present, and future.Frontiers in genetics · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Pedro M CostaDepartamento de Genética Humana, Instituto Nacional de Saúde Dr.Ricardo Jorge Lisboa, Portugal ; MARE - Marine and Environmental Sciences Centre/IMAR - Instituto do Mar, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Caparica, Portugal.
Miguel PintoDepartamento de Genética Humana, Instituto Nacional de Saúde Dr.Ricardo Jorge Lisboa, Portugal.
Ana M VicenteDepartamento de Genética Humana, Instituto Nacional de Saúde Dr.Ricardo Jorge Lisboa, Portugal.
Cátia GonçalvesMARE - Marine and Environmental Sciences Centre/IMAR - Instituto do Mar, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Caparica, Portugal.
Ana P RodrigoMARE - Marine and Environmental Sciences Centre/IMAR - Instituto do Mar, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Caparica, Portugal.
Henriqueta LouroDepartamento de Genética Humana, Instituto Nacional de Saúde Dr.Ricardo Jorge Lisboa, Portugal.
Maria H CostaMARE - Marine and Environmental Sciences Centre/IMAR - Instituto do Mar, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Caparica, Portugal.
Sandra CaeiroMARE - Marine and Environmental Sciences Centre/IMAR - Instituto do Mar, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Caparica, Portugal ; Departamento de Ciências e Tecnologia, Universidade Aberta, Rua da Escola Politécnica Lisboa, Portugal ; Centre for Environmental and Sustainability Research, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Caparica, Portugal.
Maria J SilvaDepartamento de Genética Humana, Instituto Nacional de Saúde Dr.Ricardo Jorge Lisboa, Portugal.
National Institute of Health Dr. Ricardo Jorge · PTUniversidade Nova de Lisboa · PTUniversidade Aberta · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The application of the Comet assay in environmental monitoring remains challenging in face of the complexity of environmental stressors, e.g., when dealing with estuarine sediments, that hampers the drawing of cause-effect relationships. Although the in vitro Comet assay may circumvent confounding factors, its application in environmental risk assessment (ERA) still needs validation. As such, the present work aims at integrating genotoxicity and oxidative DNA damage induced by sediment-bound toxicants in HepG2 cells with oxidative stress-related effects observed in three species collected from an impacted estuary. Distinct patterns were observed in cells exposed to crude mixtures of sediment contaminants from the urban/industrial area comparatively to the ones from the rural/riverine area of the estuary, with respect to oxidative DNA damage and oxidative DNA damage. The extracts obtained with the most polar solvent and the crude extracts caused the most significant oxidative DNA damage in HepG2 cells, as measured by the formamidopyrimidine-DNA glycosylase (FPG)-modified Comet assay. This observation suggests that metals and unknown toxicants more hydrophilic than polycyclic aromatic hydrocarbons may be important causative agents, especially in samples from the rural part of the estuary, where oxidative DNA damage was the most significant. Clams, sole, and cuttlefish responded differentially to environmental agents triggering oxidative stress, albeit yielding results accordant with the oxidative DNA damage observed in HepG2 cells. Overall, the integration of in vivo biomarker responses and Comet assay data in HepG2 cells yielded a comparable pattern, indicating that the in vitro FPG-modified Comet assay may be an effective and complementary line-of-evidence in ERA even in particularly challenging, natural, scenarios such as estuarine environments.

Indexed as

Comet assayenvironmental risk assessmentHepG2 cellsoxidative stresssediment contamination

Identifiers

PMID25540652
PMCPMC4261831
OpenAlexW2073211516

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.