Evidence map›Paper›PMID 25540577›Full record

ArticleMolecular vision2014

PTBP-dependent PSD-95 and CamKIIα alternative splicing in the lens.

Peter Frederikse, Anoop Nandanoor, Chinnaswamy Kasinathan

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. PTBP1 as a potential regulator of disease.Molecular and cellular biochemistry · 2024
    Review
  2. Review
  3. Lens Biology is a Dimension of Neurobiology.Neurochemical research · 2017
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Peter FrederikseDepartment of Oral Biology, Rutgers SDM, Newark, NJ ; Department of Pharmacology & Physiology, Rutgers BHS.
Anoop NandanoorDepartment of Oral Biology, Rutgers SDM, Newark, NJ.
Chinnaswamy KasinathanDepartment of Oral Biology, Rutgers SDM, Newark, NJ.
Rutgers, The State University of New Jersey · US

Funding

Alzheimer disease biomarkers in lensR01EY015855 · NEI · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI FREDERIKSE, PETER H. · 2007 to 2010
$1.1M
NEI NIH HHS R01 EY015855
6 · The paper itself

Abstract

purposeParallels described between neurons and lens fiber cells include detailed similarities in sub-cellular structures that increasingly show shared expression of genes involved in the construction and function of these structures in neurons. Intriguingly, associated modes of molecular regulation of these genes that had been thought to distinguish neurons have been identified in the lens as well. Both elongated cell types form membrane protrusions with similar size, shape, and spacing that exclude microtubules, contain F-actin, and are coated with the clathrin/AP-2 adaptor. Lenses express glutamate and gamma-aminobutyric acid (GABA) receptors with signaling and channel proteins shown to act together at neuronal membranes. Postsynaptic density protein 95 (PSD-95) and Ca(2+)/calmodulin-dependent protein kinase (CaMKIIα) expression and functions illustrate the integration of aspects of neuronal molecular and cell biology and were investigated here in the lens.

methodsImmunofluorescence, immunoblot, and RT-PCR methods were used to assess protein expression and alternative transcript splicing.

resultsWe showed the essential dendritic spine scaffold protein PSD-95 is expressed in lenses and demonstrated lens PSD-95 transcripts undergo polypyrimidine tract binding protein (PTBP)-dependent alternative splicing of its pivotal exon 18 required to avoid nonsense-mediated decay, and showed PTBP-dependent alternative splicing of CaMKIIα transcripts in the lens. The PSD-95 protein was observed at fiber cell membranes overlapping with N-methyl-D-aspartate (NMDA) and α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) glutamate and GABA receptor proteins, tyrosine phosphatase STEP, CaMKIIα, the Ca(V)1.3 calcium channel, and clathrin, which were previously identified at lens fiber cell membranes. During neurogenesis, miR-124 is expressed that suppresses PTBP1 and promotes these splicing events. miR-124 is also expressed in mammalian lenses and upregulated during lens regeneration in amphibians, consistent with previous demonstrations of PTBP1,2 and PTBP-dependent PTBP2 exon 10 splicing in rodent lenses.

conclusionsFindings of this dendritic spine scaffold protein and conservation of its key mode of molecular regulation in the lens provides further evidence that key aspects of the neuron morphogenetic program are shared with the lens.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBase SequenceCalcium-Calmodulin-Dependent Protein Kinase Type 2Disks Large Homolog 4 ProteinDNA, ComplementaryFluorescent Antibody Technique, IndirectGene ExpressionGuanylate KinasesLens, CrystallineMembrane ProteinsMiceMice, Inbred BALB CMolecular Sequence DataPolypyrimidine Tract-Binding ProteinCalcium-Calmodulin-Dependent Protein Kinase Type 2Disks Large Homolog 4 ProteinDlg4 protein, mouseDNA, ComplementaryGuanylate KinasesMembrane ProteinsPolypyrimidine Tract-Binding Protein

Identifiers

PMID25540577
PMCPMC4265770
OpenAlexW2102906124

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.