Evidence map›Paper›PMID 25540416›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Epstein-Barr virus nuclear antigen 3A partially coincides with EBNA3C genome-wide and is tethered to DNA through BATF complexes.

Stefanie C S Schmidt, Sizun Jiang, Hufeng Zhou, Bradford Willox, Amy M Holthaus, Peter V Kharchenko, Eric C Johannsen, Elliott Kieff, Bo Zhao

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  4. Multiple sclerosis and infection: history, EBV, and the search for mechanism.Microbiology and molecular biology reviews : MMBR · 2025
    Review
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  17. Functional interplay of Epstein-Barr virus oncoproteins in a mouse model of B cell lymphomagenesis.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Stefanie C S SchmidtDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115;
Sizun JiangDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115;
Hufeng ZhouDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115;
Bradford WilloxDepartment of Medicine, Brigham and Women's Hospital, Boston, MA 02115;
Amy M HolthausDepartment of Medicine, Brigham and Women's Hospital, Boston, MA 02115;
Peter V KharchenkoCenter for Biomedical Informatics, Harvard Medical School and Division of Hematology, Children's Hospital, Boston, MA 02115; and.
Eric C JohannsenDepartment of Medicine and McArdle Laboratory for Cancer Research, University of Wisconsin, Madison, WI 53706.
Elliott KieffDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115; ekieff@rics.bwh.harvard.edu.
Bo ZhaoDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115;
Brigham and Women's Hospital · USHarvard University · USUniversity of Wisconsin–Madison · US

Funding

Epstein-Barr Virus Nuclear Proteins in B Cell Growth TransformationR01CA047006 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ZHAO, BO · 2002 to 2021
$12.1M
Epstein-Barr Virus LMP-1 Mediated OncongenicityR01CA085180 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI KIEFF, ELLIOTT D · 2000 to 2016
$10.6M
Roles of Epstein-Barr virus nuclear antigens 2 and LP in B cell proliferationR01CA170023 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ZHAO, BO · 2013 to 2017
$1.9M
NCI NIH HHS R01 CA047006NCI NIH HHS R01CA047006NCI NIH HHS R01 CA085180NCI NIH HHS R01CA085180NCI NIH HHS R01 CA170023NCI NIH HHS R01CA170023
6 · The paper itself

Abstract

Epstein-Barr Virus (EBV) conversion of B-lymphocytes to Lymphoblastoid Cell Lines (LCLs) requires four EBV nuclear antigen (EBNA) oncoproteins: EBNA2, EBNALP, EBNA3A, and EBNA3C. EBNA2 and EBNALP associate with EBV and cell enhancers, up-regulate the EBNA promoter, MYC, and EBV Latent infection Membrane Proteins (LMPs), which up-regulate BCL2 to protect EBV-infected B-cells from MYC proliferation-induced cell death. LCL proliferation induces p16(INK4A) and p14(ARF)-mediated cell senescence. EBNA3A and EBNA3C jointly suppress p16(INK4A) and p14(ARF), enabling continuous cell proliferation. Analyses of the EBNA3A human genome-wide ChIP-seq landscape revealed 37% of 10,000 EBNA3A sites to be at strong enhancers; 28% to be at weak enhancers; 4.4% to be at active promoters; and 6.9% to be at weak and poised promoters. EBNA3A colocalized with BATF-IRF4, ETS-IRF4, RUNX3, and other B-cell Transcription Factors (TFs). EBNA3A sites clustered into seven unique groups, with differing B-cell TFs and epigenetic marks. EBNA3A coincidence with BATF-IRF4 or RUNX3 was associated with stronger EBNA3A ChIP-Seq signals. EBNA3A was at MYC, CDKN2A/B, CCND2, CXCL9/10, and BCL2, together with RUNX3, BATF, IRF4, and SPI1. ChIP-re-ChIP revealed complexes of EBNA3A on DNA with BATF. These data strongly support a model in which EBNA3A is tethered to DNA through a BATF-containing protein complexes to enable continuous cell proliferation.

Indexed as

Genome, ViralBasic-Leucine Zipper Transcription FactorsBinding SitesB-LymphocytesCell LineChemokine CXCL10Chemokine CXCL9Core Binding Factor Alpha 3 SubunitCyclin D2DNAEnhancer Elements, GeneticEpstein-Barr Virus Nuclear AntigensGenes, bcl-2Genes, mycGenes, p16Genome, HumanBasic-Leucine Zipper Transcription FactorsBATF protein, humanCCND2 protein, humanChemokine CXCL10Chemokine CXCL9Core Binding Factor Alpha 3 SubunitCXCL10 protein, humanCXCL9 protein, humanCyclin D2DNAEBNA-2 protein, Human herpesvirus 4EBNA-3A antigenEBNA-3C, epstein-barr virusEBNA-LP protein, Human herpesvirus 4Epstein-Barr Virus Nuclear AntigensImmunoglobulin J Recombination Signal Sequence-Binding ProteinInterferon Regulatory Factor-4Interferon Regulatory FactorsRBPJ protein, humanRunx3 protein, humanViral ProteinsBATFCDKN2AEBNA3AIRF4RUNX3

Identifiers

PMID25540416
PMCPMC4299249
OpenAlexW1983177630

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.