Evidence map›Paper›PMID 25540415›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Energetic basis for the molecular-scale organization of bone.

Jinhui Tao, Keith C Battle, Haihua Pan, E Alan Salter, Yung-Ching Chien, Andrzej Wierzbicki, James J De Yoreo

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Molecular-level understanding of the aging bone and regeneration mechanisms using computational methods.Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA · 2026
    Review
  3. Cross-linking of collagen fibrils leads to preferential gap zone mineralization in vitro.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Jinhui TaoMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720; Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352;
Keith C BattleDepartment of Chemistry, University of South Alabama, Mobile, AL 36688;
Haihua PanQiushi Academy for Advanced Studies, Zhejiang University, Hangzhou, 310027 China; and.
E Alan SalterDepartment of Chemistry, University of South Alabama, Mobile, AL 36688;
Yung-Ching ChienMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720; Department of Preventive and Restorative Dental Sciences, University of California, San Francisco, CA 94143.
Andrzej WierzbickiDepartment of Chemistry, University of South Alabama, Mobile, AL 36688; awierzbicki@southalabama.edu james.deyoreo@pnnl.gov.
James J De YoreoMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720; Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352; awierzbicki@southalabama.edu james.deyoreo@pnnl.gov.
University of South Alabama · USPacific Northwest National Laboratory · USUniversity of California, San Francisco · USZhejiang University · CN

Funding

THE MINERALIZATION OF TEETHR01DE003223 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI NANCOLLAS, GEORGE H.ARVEY · 1985 to 2012
$4.4M
Molecular modulation of calcium oxalate crystallizationR01DK061673 · NIDDK · UNIVERSITY OF CALIF-LAWRNC LVRMR NAT LAB · PI DE YOREO, JAMES J · 2002 to 2005
$1.6M
THE KINETICS OF MINERALIZATION OF TEETHR37DE003223 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI NANCOLLAS, GEORGE H.ARVEY · 1991 to 2000
$216k
NIDCR NIH HHS DE003223NIDCR NIH HHS R01 DE003223NIDCR NIH HHS R37 DE003223NIDDK NIH HHS DK61673NIDDK NIH HHS R01 DK061673
6 · The paper itself

Abstract

The remarkable properties of bone derive from a highly organized arrangement of coaligned nanometer-scale apatite platelets within a fibrillar collagen matrix. The origin of this arrangement is poorly understood and the crystal structures of hydroxyapatite (HAP) and the nonmineralized collagen fibrils alone do not provide an explanation. Moreover, little is known about collagen-apatite interaction energies, which should strongly influence both the molecular-scale organization and the resulting mechanical properties of the composite. We investigated collagen-mineral interactions by combining dynamic force spectroscopy (DFS) measurements of binding energies with molecular dynamics (MD) simulations of binding and atomic force microscopy (AFM) observations of collagen adsorption on single crystals of calcium phosphate for four mineral phases of potential importance in bone formation. In all cases, we observe a strong preferential orientation of collagen binding, but comparison between the observed orientations and transmission electron microscopy (TEM) analyses of native tissues shows that only calcium-deficient apatite (CDAP) provides an interface with collagen that is consistent with both. MD simulations predict preferred collagen orientations that agree with observations, and results from both MD and DFS reveal large values for the binding energy due to multiple binding sites. These findings reconcile apparent contradictions inherent in a hydroxyapatite or carbonated apatite (CAP) model of bone mineral and provide an energetic rationale for the molecular-scale organization of bone.

Indexed as

AnimalsBinding SitesBone and BonesCattleDentinDurapatiteEnergy MetabolismFibrillar CollagensHumansMicroscopy, Atomic ForceMicroscopy, Electron, TransmissionModels, MolecularMolecular Dynamics SimulationNanostructuresRatsDurapatiteFibrillar Collagensbiomineralizationbonedynamic force spectroscopyprotein–mineral interface

Identifiers

PMID25540415
PMCPMC4299241
OpenAlexW2139530897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.