Evidence map›Paper›PMID 25540346›Full record

ArticleGenome announcements2014

Complete Genome Sequence for Treponema sp. OMZ 838 (ATCC 700772, DSM 16789), Isolated from a Necrotizing Ulcerative Gingivitis Lesion.

Yuki Chan, Angel P Y Ma, Donnabella C Lacap-Bugler, Yong-Biao Huo, W Keung Leung, Frederick C Leung, Rory M Watt

Open access · diamondAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Complete Genome Sequence of Human Oral Phylogroup 1Microbiology resource announcements · 2020
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yuki ChanOral Biosciences, Faculty of Dentistry, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
Angel P Y MaSchool of Biological Sciences, Faculty of Science, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
Donnabella C Lacap-BuglerOral Diagnosis and Polyclinics, Faculty of Dentistry, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
Yong-Biao HuoOral Biosciences, Faculty of Dentistry, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
W Keung LeungOral Diagnosis and Polyclinics, Faculty of Dentistry, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
Frederick C Leungfcleung@hkucc.hku.hk rmwatt@hku.hk.
Rory M WattOral Biosciences, Faculty of Dentistry, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China fcleung@hkucc.hku.hk rmwatt@hku.hk.ORCID http://orcid.org/0000-0002-8718-1988
University of Hong Kong · HKHong Kong University of Science and Technology · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The oral treponeme bacterium Treponema sp. OMZ 838 was originally isolated from a human necrotizing ulcerative gingivitis (NUG) lesion. Its taxonomic status remains uncertain. The complete genome sequence length was determined to be 2,708,067 bp, with a G+C content of 44.58%, and 2,236 predicted coding DNA sequences (CDS).

Identifiers

PMID25540346
PMCPMC4276824
OpenAlexW2016861192

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.