Evidence map›Paper›PMID 25540199›Full record

ArticleThe Journal of biological chemistry2015

Polysaccharide A from the capsule of Bacteroides fragilis induces clonal CD4+ T cell expansion.

Jenny L Johnson, Mark B Jones, Brian A Cobb

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Outer Membrane Vesicles FromJournal of extracellular biology · 2025
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Winds of change a tale of: asthma and microbiome.Frontiers in microbiology · 2023
    Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jenny L JohnsonFrom the Department of Pathology, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106.
Mark B JonesFrom the Department of Pathology, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106.
Brian A CobbFrom the Department of Pathology, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106. Electronic address: brian.cobb@case.edu.
Case Western Reserve University · USUniversity School · US

Funding

Immunology Training Program-PredoctoralT32AI089474 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI COBB, BRIAN A · 2010 to 2025
$3.4M
Antigenic Carbohydrate Structure, Function, and SpecificityR01GM082916 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI COBB, BRIAN A · 2009 to 2016
$1.9M
T cell Dependent Immune Responses to Carbohydrate AntigensDP2OD004225 · OD · CASE WESTERN RESERVE UNIVERSITY · PI COBB, BRIAN A · 2008 to 2008
$1.9M
NIAID NIH HHS T32 AI089474NIGMS NIH HHS GM082916NIGMS NIH HHS R01 GM082916NIH HHS DP2 OD004225NIH HHS OD004225
6 · The paper itself

Abstract

For 3 decades, the view of MHCII-dependent antigen presentation has been completely dominated by peptide antigens despite our 2004 discovery in which MHCII was shown to present processed fragments of zwitterionic capsular polysaccharides to T cells. Published findings further demonstrate that polysaccharide A (PSA) from the capsule of Bacteroides fragilis is a potent activator of CD4(+) T cells and that these T cells have important biological functions, especially in the maintenance of immunological homeostasis. However, little is known about the nature of T cell recognition of the polysaccharide-MHCII complex or the phenotype of the resulting activated cells. Here, we use next-generation sequencing of the αβT cell receptor of CD4(+) T cells from mice stimulated with PSA in comparison with protein antigen simulation and non-immunized controls and found that PSA immunization induced clonal expansion of a small subset of suppressive CD4(+)CD45RB(low) effector/memory T cells. Moreover, the sequences of the complementarity-determining region 3 (CDR3) loop from top clones indicate a lack of specific variable β and joining region use and average CDR3 loop length. There was also a preference for a zwitterionic motif within the CDR3 loop sequences, aligning well with the known requirement for a similar motif within PSA to enable T cell activation. These data support a model in which PSA, and possibly other T cell-dependent polysaccharide antigens, elicits a clonal and therefore specific CD4(+) T cell response often characterized by pairing dual-charged CDR3 loop sequences with dual-charged PSA.

Indexed as

AnimalsBacterial CapsulesBacteroides fragilisCD4-Positive T-LymphocytesComplementarity Determining RegionsImmunologic MemoryLymphocyte ActivationMicePolysaccharides, BacterialReceptors, Antigen, T-Cell, alpha-betaComplementarity Determining RegionsPolysaccharides, BacterialReceptors, Antigen, T-Cell, alpha-betaGlycobiologyImmunologyLymphocyteMajor Histocompatibility Complex (MHC)Polysaccharide

Identifiers

PMID25540199
PMCPMC4335237
OpenAlexW2026779719

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.