Evidence map›Paper›PMID 25540025›Full record

ArticleBMC medical genetics2014

Single nucleotide polymorphisms in DNA repair genes as risk factors associated to prostate cancer progression.

Luis Alberto Henríquez-Hernández, Almudena Valenciano, Palmira Foro-Arnalot, María Jesús Álvarez-Cubero, José Manuel Cozar, José Francisco Suárez-Novo, Manel Castells-Esteve, Pablo Fernández-Gonzalo, Belén De-Paula-Carranza, Montse Ferrer and 9 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in BMC medical genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 12 institutions in 1 country.

Luis Alberto Henríquez-Hernández
Almudena Valenciano
Palmira Foro-Arnalot
María Jesús Álvarez-Cubero
José Manuel Cozar
José Francisco Suárez-Novo
Manel Castells-Esteve
Pablo Fernández-Gonzalo
Belén De-Paula-Carranza
Montse Ferrer
Ferrán Guedea
Gemma Sancho-Pardo
Jordi Craven-Bartle
María José Ortiz-Gordillo
Patricia Cabrera-Roldán
Estefanía Herrera-Ramos
Carlos Rodríguez-Gallego
Juan Ignacio Rodríguez-Melcón
Pedro C Lara
Bellvitge University Hospital · ESCanary Institute of Cancer Research · ESHospital de Sant Pau · ESHospital Universitario de Gran Canaria Doctor Negrín · ESHospital Universitario Virgen del Rocío · ESOnkologikoa · ESUniversidad de Las Palmas de Gran Canaria · ESHospital Del Mar · ESHospital Universitario Virgen de las Nieves · ESInstitut Català d'Oncologia · ESParc de Salut · ESPfizer-University of Granada-Junta de Andalucía Centre for Genomics and Oncological Research · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBesides serum levels of PSA, there is a lack of prostate cancer specific biomarkers. It is need to develop new biological markers associated with the tumor behavior which would be valuable to better individualize treatment. The aim of this study was to elucidate the relationship between single nucleotide polymorphisms (SNPs) in genes involved in DNA repair and prostate cancer progression.

methodsA total of 494 prostate cancer patients from a Spanish multicenter study were genotyped for 10 SNPs in XRCC1, ERCC2, ERCC1, LIG4, ATM and TP53 genes. The SNP genotyping was made in a Biotrove OpenArray® NT Cycler. Clinical tumor stage, diagnostic PSA serum levels, and Gleason score at diagnosis were obtained for all participants. Genotypic and allelic frequencies were determined using the web-based environment SNPator.

resultsSNPs rs11615 (ERCC1) and rs17503908 (ATM) appeared as risk factors for prostate cancer aggressiveness. Patients wild homozygous for these SNPs (AA and TT, respectively) were at higher risk for developing cT2b - cT4 (OR = 2.21 (confidence interval (CI) 95% 1.47 - 3.31), p < 0.001) and Gleason scores ≥ 7 (OR = 2.22 (CI 95% 1.38 - 3.57), p < 0.001), respectively. Moreover, those patients wild homozygous for both SNPs had the greatest risk of presenting D'Amico high-risk tumors (OR = 2.57 (CI 95% 1.28 - 5.16)).

conclusionsGenetic variants at DNA repair genes are associated with prostate cancer progression, and would be taken into account when assessing the malignancy of prostate cancer.

Indexed as

Disease ProgressionDNA RepairPolymorphism, Single NucleotideAtaxia Telangiectasia Mutated ProteinsBiomarkersCohort StudiesDNA-Binding ProteinsDNA DamageDNA Ligase ATPDNA LigasesEndonucleasesGene FrequencyGenotypeHumansLogistic ModelsMaleAtaxia Telangiectasia Mutated ProteinsATM protein, humanBiomarkersDNA-Binding ProteinsDNA Ligase ATPDNA LigasesEndonucleasesERCC1 protein, humanERCC2 protein, humanLIG4 protein, humanProstate-Specific AntigenTP53 protein, humanTumor Suppressor Protein p53Xeroderma Pigmentosum Group D ProteinX-ray Repair Cross Complementing Protein 1XRCC1 protein, human

Identifiers

PMID25540025
PMCPMC4316399
OpenAlexW2071119751

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.