Evidence map›Paper›PMID 25539911›Full record

ArticleBMC genomics2014

Functional mechanisms of drought tolerance in subtropical maize (Zea mays L.) identified using genome-wide association mapping.

Nepolean Thirunavukkarasu, Firoz Hossain, Kanika Arora, Rinku Sharma, Kaliyugam Shiriga, Swati Mittal, Sweta Mohan, Pottekatt Mohanlal Namratha, Sreelatha Dogga, Tikka Shobha Rani and 5 more

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Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 84 citations in OpenAlex.

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  19. Tolerance mechanisms in maize identified through phenotyping and transcriptome analysis in response to water deficit stress.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Nepolean ThirunavukkarasuDivision of Genetics, Indian Agricultural Research Institute, Pusa, New Delhi 110012, India. tnepolean@gmail.com.
Firoz Hossain
Kanika Arora
Rinku Sharma
Kaliyugam Shiriga
Swati Mittal
Sweta Mohan
Pottekatt Mohanlal Namratha
Sreelatha Dogga
Tikka Shobha Rani
Sumalini Katragadda
Abhishek Rathore
Trushar Shah
Trilochan Mohapatra
Hari Shankar Gupta
Indian Agricultural Research Institute · INAcharya N. G. Ranga Agricultural University · INInternational Crops Research Institute for the Semi-Arid Tropics · INNational Research Centre on Plant Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEarlier studies were focused on the genetics of temperate and tropical maize under drought. We identified genetic loci and their association with functional mechanisms in 240 accessions of subtropical maize using a high-density marker set under water stress.

resultsOut of 61 significant SNPs (11 were false-discovery-rate-corrected associations), identified across agronomic traits, models, and locations by subjecting the accessions to water stress at flowering stage, 48% were associated with drought-tolerant genes. Maize gene models revealed that SNPs mapped for agronomic traits were in fact associated with number of functional traits as follows: stomatal closure, 28; flowering, 15; root development, 5; detoxification, 4; and reduced water potential, 2. Interactions of these SNPS through the functional traits could lead to drought tolerance. The SNPs associated with ABA-dependent signalling pathways played a major role in the plant's response to stress by regulating a series of functions including flowering, root development, auxin metabolism, guard cell functions, and scavenging reactive oxygen species (ROS). ABA signalling genes regulate flowering through epigenetic changes in stress-responsive genes. ROS generated by ABA signalling are reduced by the interplay between ethylene, ABA, and detoxification signalling transductions. Integration of ABA-signalling genes with auxin-inducible genes regulates root development which in turn, maintains the water balance by regulating electrochemical gradient in plant.

conclusionsSeveral genes are directly or indirectly involved in the functioning of agronomic traits related to water stress. Genes involved in these crucial biological functions interacted significantly in order to maintain the primary as well as exclusive functions related to coping with water stress. SNPs associated with drought-tolerant genes involved in strategic biological functions will be useful to understand the mechanisms of drought tolerance in subtropical maize.

Indexed as

Chromosome MappingDroughtsGenome-Wide Association StudyTropical ClimateEpigenesis, GeneticGenes, PlantPhenotypePolymorphism, Single NucleotideSignal TransductionStress, PhysiologicalZea mays

Identifiers

PMID25539911
PMCPMC4367829
OpenAlexW1580587952

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.