Evidence map›Paper›PMID 25539728›Full record

ArticleBMC cancer2014

Genome-wide identification of FoxO-dependent gene networks in skeletal muscle during C26 cancer cachexia.

Sarah M Judge, Chia-Ling Wu, Adam W Beharry, Brandon M Roberts, Leonardo F Ferreira, Susan C Kandarian, Andrew R Judge

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
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  7. An alternative pocket for binding the N-degrons by the UBR1 and UBR2 ubiquitin E3 ligases.Protein science : a publication of the Protein Society · 2025
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  9. Cancer Cachexia.Advances in experimental medicine and biology · 2025
    Review
  10. Role of myofiber-specific FoxP1 in pancreatic cancer-induced muscle wasting.American journal of physiology. Cell physiology · 2025
    Article
  11. Article
  12. Article
  13. Involvement of the gut microbiota in cancer cachexia.American journal of physiology. Cell physiology · 2024
    Review
  14. Review
  15. Article
  16. Review
  17. Review
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  19. Article
  20. Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sarah M JudgeDepartment of Physical Therapy, University of Florida, 1225 Center Drive, HPNP Building 1142, Gainesville, Florida, USA. smsenf@ufl.edu.
Chia-Ling WuDepartment of Health Sciences, Boston University, Boston, Massachusetts, USA. clwu@bu.edu.
Adam W BeharryDepartment of Physical Therapy, University of Florida, 1225 Center Drive, HPNP Building 1142, Gainesville, Florida, USA. beharrya1@phhp.ufl.edu.
Brandon M RobertsDepartment of Physical Therapy, University of Florida, 1225 Center Drive, HPNP Building 1142, Gainesville, Florida, USA. brob21@ufl.edu.
Leonardo F FerreiraDepartment of Applied Physiology and Kinesiology, University of Florida, Gainesville, Florida, USA. ferreira@hhp.ufl.edu.
Susan C KandarianDepartment of Health Sciences, Boston University, Boston, Massachusetts, USA. skandar@bu.edu.
Andrew R JudgeDepartment of Physical Therapy, University of Florida, 1225 Center Drive, HPNP Building 1142, Gainesville, Florida, USA. arjudge@phhp.ufl.edu.
University of Florida · USBoston University · US

Funding

Training In Rehabilitation and Neuromuscular PlasticityT32HD043730 · NICHD · UNIVERSITY OF FLORIDA · PI DAVID D FULLER · 2003 to 2026
$5.3M
FOXO signaling and skeletal muscle atrophyR01AR060209 · NIAMS · UNIVERSITY OF FLORIDA · PI JUDGE, ANDREW ROBERT · 2011 to 2021
$4.2M
The Molecular Basis of Muscle Wasting in Cancer CachexiaR01AR060217 · NIAMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI JACKMAN, ROBERT W, KANDARIAN, SUSAN · 2011 to 2015
$1.8M
Mechanisms of Respiratory Muscle Dysfunction in Heart FailureR00HL098453 · NHLBI · UNIVERSITY OF FLORIDA · PI FERREIRA, LEONARDO · 2011 to 2013
$735k
NHLBI NIH HHS R00 HL098453NHLBI NIH HHS R00HL098453NIAMS NIH HHS R01 AR060209NIAMS NIH HHS R01AR060209NIAMS NIH HHS R01 AR060217NIAMS NIH HHS R01AR060217NICHD NIH HHS T32 HD043730
6 · The paper itself

Abstract

backgroundEvidence from cachectic cancer patients and animal models of cancer cachexia supports the involvement of Forkhead box O (FoxO) transcription factors in driving cancer-induced skeletal muscle wasting. However, the genome-wide gene networks and associated biological processes regulated by FoxO during cancer cachexia are unknown. We hypothesize that FoxO is a central upstream regulator of diverse gene networks in skeletal muscle during cancer that may act coordinately to promote the wasting phenotype.

methodsTo inhibit endogenous FoxO DNA-binding, we transduced limb and diaphragm muscles of mice with AAV9 containing the cDNA for a dominant negative (d.n.) FoxO protein (or GFP control). The d.n.FoxO construct consists of only the FoxO3a DNA-binding domain that is highly homologous to that of FoxO1 and FoxO4, and which outcompetes and blocks endogenous FoxO DNA binding. Mice were subsequently inoculated with Colon-26 (C26) cells and muscles harvested 26 days later.

resultsBlocking FoxO prevented C26-induced muscle fiber atrophy of both locomotor muscles and the diaphragm and significantly spared force deficits. This sparing of muscle size and function was associated with the differential regulation of 543 transcripts (out of 2,093) which changed in response to C26. Bioinformatics analysis of upregulated gene transcripts that required FoxO revealed enrichment of the proteasome, AP-1 and IL-6 pathways, and included several atrophy-related transcription factors, including Stat3, Fos, and Cebpb. FoxO was also necessary for the cancer-induced downregulation of several gene transcripts that were enriched for extracellular matrix and sarcomere protein-encoding genes. We validated these findings in limb muscles and the diaphragm through qRT-PCR, and further demonstrate that FoxO1 and/or FoxO3a are sufficient to increase Stat3, Fos, Cebpb, and the C/EBPβ target gene, Ubr2. Analysis of the Cebpb proximal promoter revealed two bona fide FoxO binding elements, which we further establish are necessary for Cebpb promoter activation in response to IL-6, a predominant cytokine in the C26 cancer model.

conclusionsThese findings provide new evidence that FoxO-dependent transcription is a central node controlling diverse gene networks in skeletal muscle during cancer cachexia, and identifies novel candidate genes and networks for further investigation as causative factors in cancer-induced wasting.

Indexed as

Gene Regulatory NetworksGenome-Wide Association StudyAmino Acid SequenceAnimalsCachexiaColonic NeoplasmsDependovirusDisease Models, AnimalExtracellular MatrixForkhead Transcription FactorsGene Expression ProfilingGene Expression RegulationGenetic VectorsHeterograftsHumansMaleForkhead Transcription FactorsProteasome Endopeptidase ComplexTranscription Factors

Identifiers

PMID25539728
PMCPMC4391468
OpenAlexW1564746483

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.