Evidence map›Paper›PMID 25538716›Full record

ArticleFrontiers in plant science2014

Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea.

Neha Gujaria-Verma, Sally L Vail, Noelia Carrasquilla-Garcia, R Varma Penmetsa, Douglas R Cook, Andrew D Farmer, Albert Vandenberg, Kirstin E Bett

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
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  10. Capturing variation inApplications in plant sciences · 2018
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  13. A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Neha Gujaria-VermaDepartment of Plant Sciences, University of Saskatchewan Saskatoon, SK, Canada.
Sally L VailDepartment of Plant Sciences, University of Saskatchewan Saskatoon, SK, Canada ; Department of Plant Pathology, University of California, Davis Davis, CA, USA.
Noelia Carrasquilla-GarciaDepartment of Plant Pathology, University of California, Davis Davis, CA, USA.
R Varma PenmetsaDepartment of Plant Pathology, University of California, Davis Davis, CA, USA.
Douglas R CookDepartment of Plant Pathology, University of California, Davis Davis, CA, USA.
Andrew D FarmerBioinformatics, National Centre for Genomic Resources Santa Fe, NM, USA.
Albert VandenbergDepartment of Plant Sciences, University of Saskatchewan Saskatoon, SK, Canada.
Kirstin E BettDepartment of Plant Sciences, University of Saskatchewan Saskatoon, SK, Canada.
University of Saskatchewan · CAUniversity of California, Davis · USNational Center for Genome Resources · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lentil (Lens culinaris Medik.) is a global food crop with increasing importance for food security in south Asia and other regions. Lens ervoides, a wild relative of cultivated lentil, is an important source of agronomic trait variation. Lens is a member of the galegoid clade of the Papilionoideae family, which includes other important dietary legumes such as chickpea (Cicer arietinum) and pea (Pisum sativum), and the sequenced model legume Medicago truncatula. Understanding the genetic structure of Lens spp. in relation to more fully sequenced legumes would allow leveraging of genomic resources. A set of 1107 TOG-based amplicons were identified in L. ervoides and a subset thereof used to design SNP markers for mapping. A map of L. ervoides consisting of 377 SNP markers spread across seven linkage groups was developed using a GoldenGate genotyping array and single SNP marker assays. Comparison with maps of M. truncatula and L. culinaris documented considerable shared synteny and led to the identification of a few major translocations and a major inversion that distinguish Lens from M. truncatula, as well as a translocation that distinguishes L. culinaris from L. ervoides. The identification of chromosome-level differences among Lens spp. will aid in the understanding of introgression of genes from L. ervoides into cultivated L. culinaris, furthering genetic research and breeding applications in lentil.

Indexed as

legume tentative orthologsmappingMedicagosyntenytranslocationwild lentil

Identifiers

PMID25538716
PMCPMC4256995
OpenAlexW2084837034

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.