Evidence map›Paper›PMID 25538688›Full record

ArticleFrontiers in microbiology2014

Emergence of a novel subpopulation of CC398 Staphylococcus aureus infecting animals is a serious hazard for humans.

Nathalie L van der Mee-Marquet, Anna Corvaglia, Marisa Haenni, Xavier Bertrand, Jean-Baptiste Franck, Jan Kluytmans, Myriam Girard, Roland Quentin, Patrice François

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Antimicrobial Susceptibility Profiles of CommensalAntibiotics (Basel, Switzerland) · 2025
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  3. Article
  4. TheGenes · 2021
    Review
  5. Review
  6. Livestock-Associated Methicillin-ResistantFoods (Basel, Switzerland) · 2020
    Article
  7. Livestock-associated methicillin-resistantJournal of veterinary science · 2020
    Article
  8. Article
  9. Temperate Phages ofMicrobiology spectrum · 2019
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Accuracy of PCR targeting different markers for Staphylococcus aureus identification: a comparative study using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry as the gold standard.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2018
    Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Nathalie L van der Mee-MarquetService de Bactériologie et Hygiène, Centre Hospitalier Régional Universitaire Tours, France ; UMR 1282, Infectiologie et Santé Publique, Université Francois Rabelais Tours, France.
Anna CorvagliaGenomic Research Laboratory, University of Geneva Hospitals Geneva, Switzerland.
Marisa HaenniUnité Antibiorésistance et Virulence Bactériennes, Agence Nationale de Sécurité Sanitaire (Anses) Lyon, France.
Xavier BertrandService d'Hygiène, Centre Hospitalier Universitaire Besançon, France ; UMR 6249 Chrono-environnement, Université de Franche-Comté Besançon, France.
Jean-Baptiste FranckService de Bactériologie et Hygiène, Centre Hospitalier Régional Universitaire Tours, France.
Jan KluytmansLaboratory for Microbiology and Infection Control, Amphia Hospital, Breda and VU University Medical Center Amsterdam, Netherlands.
Myriam GirardGenomic Research Laboratory, University of Geneva Hospitals Geneva, Switzerland.
Roland QuentinService de Bactériologie et Hygiène, Centre Hospitalier Régional Universitaire Tours, France.
Patrice FrançoisGenomic Research Laboratory, University of Geneva Hospitals Geneva, Switzerland.
University of Geneva · CHCentre Hospitalier Universitaire de Tours · FRAgence Nationale de la Recherche · FRAmphia Ziekenhuis · NLCentre Hospitalier Universitaire de Besançon · FRUniversité de Tours · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Until recently, Staphylococcus aureus from clonal complex (CC)398 were mostly described as colonizing asymptomatic raised pigs and pig-farmers. Currently, the epidemiology of the CC398 lineage is becoming more complex. CC398 human-adapted isolates are increasingly being identified in bloodstream infections in humans living in animal-free environments. In addition, CC398 isolates are increasingly responsible for invasive infections in various animals. CC398 isolates that colonize asymptomatic pigs and the isolates that infect humans living in animal-free environments (human-adapted isolates) both lack several clinically important S. aureus-associated virulence factors but differ on the basis of their prophage content. Recent findings have provided insight into the influence of a φMR11-like helper prophage on the ability of CC398 isolates to infect humans. To assess the recent spread of the CC398 lineage to various animal species and to investigate the links between the φMR11-like prophage and the emergence of CC398 isolates infecting animals, we studied 277 isolates causing infections in unrelated animals. The prevalence of CC398 isolates increased significantly between 2007 and 2013 (p < 0.001); 31.8% of the animal isolates harbored the φMR11-like prophage. High-density DNA microarray experiments with 37 representative infected-animal isolates positive for φMR11-like DNA established that most infected-animal isolates carried many genetic elements related to antimicrobial resistance and virulence genes, and a φ3 prophage encoding immune-modulating proteins and associated with animal-to-human jumps. Our findings suggest recent clonal expansion and dissemination of a new subpopulation of CC398 isolates, responsible for invasive infections in various animals, with a considerable potential to colonize and infect humans, probably greater than that of human-adapted CC398 isolates, justifying active surveillance.

Indexed as

bacteriophagegenome contentgenome plasticitylysogenyvirulence factor

Identifiers

PMID25538688
PMCPMC4257084
OpenAlexW1977848725

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.