Evidence map›Paper›PMID 25538301›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

ATRX tolerates activity-dependent histone H3 methyl/phos switching to maintain repetitive element silencing in neurons.

Kyung-Min Noh, Ian Maze, Dan Zhao, Bin Xiang, Wendy Wenderski, Peter W Lewis, Li Shen, Haitao Li, C David Allis

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
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  10. Multiple Roles of dXNP and dADD1-International journal of molecular sciences · 2023
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  18. Loss of the neural-specific BAF subunit ACTL6B relieves repression of early response genes and causes recessive autism.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. The Fate of Speckled Protein 100 (Sp100) During Herpesviruses Infection.Frontiers in cellular and infection microbiology · 2020
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Kyung-Min NohLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065;
Ian MazeDepartment of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, NY 10029; Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY 10029; alliscd@rockefeller.edu lht@tsinghua.edu.cn.
Dan ZhaoCollege of Life Sciences, Peking University, Beijing 100871, People's Republic of China; Center for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing 100084, People's Republic of China; and.
Bin XiangCollege of Life Sciences, Peking University, Beijing 100871, People's Republic of China; Center for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing 100084, People's Republic of China; and.
Wendy WenderskiLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065;
Peter W LewisWisconsin Institute for Discovery, School of Medicine and Public Health, Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI 53715.
Li ShenDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY 10029;
Haitao LiCenter for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing 100084, People's Republic of China; and alliscd@rockefeller.edu lht@tsinghua.edu.cn.
C David AllisLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065; alliscd@rockefeller.edu lht@tsinghua.edu.cn.
Rockefeller University · USIcahn School of Medicine at Mount Sinai · USPeking University · CNTsinghua University · CNUniversity of Wisconsin–Madison · US

Funding

REPRESSIVE HISTONE AND DNA METHYLATION IN RODENT DEPRESSION MODELSP50MH096890 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI TAMMINGA, CAROL A · 2012 to 2021
$20.2M
INFLUENCE OF HISTONE H1 AND HMGS ON GENE EXPRESSIONR01GM040922 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 1989 to 2022
$10.0M
Epigenomic Profile and Function of H3.3 Variant During Sensitive Period of NeurodR01MH094698 · NIMH · ROCKEFELLER UNIVERSITY · PI ALLIS, CHARLES DAVID · 2011 to 2015
$2.1M
NIGMS NIH HHS R01 GM040922NIMH NIH HHS 5R01 MH094698-03NIMH NIH HHS P50 MH096890NIMH NIH HHS P50 MH096890-02NIMH NIH HHS R01 MH094698
6 · The paper itself

Abstract

ATRX (the alpha thalassemia/mental retardation syndrome X-linked protein) is a member of the switch2/sucrose nonfermentable2 (SWI2/SNF2) family of chromatin-remodeling proteins and primarily functions at heterochromatic loci via its recognition of "repressive" histone modifications [e.g., histone H3 lysine 9 tri-methylation (H3K9me3)]. Despite significant roles for ATRX during normal neural development, as well as its relationship to human disease, ATRX function in the central nervous system is not well understood. Here, we describe ATRX's ability to recognize an activity-dependent combinatorial histone modification, histone H3 lysine 9 tri-methylation/serine 10 phosphorylation (H3K9me3S10ph), in postmitotic neurons. In neurons, this "methyl/phos" switch occurs exclusively after periods of stimulation and is highly enriched at heterochromatic repeats associated with centromeres. Using a multifaceted approach, we reveal that H3K9me3S10ph-bound Atrx represses noncoding transcription of centromeric minor satellite sequences during instances of heightened activity. Our results indicate an essential interaction between ATRX and a previously uncharacterized histone modification in the central nervous system and suggest a potential role for abnormal repetitive element transcription in pathological states manifested by ATRX dysfunction.

Indexed as

AnimalsCalorimetryChromatin ImmunoprecipitationCrystallizationDNA HelicasesDNA MethylationDNA PrimersDrosophilaFemaleFlow CytometryFluorescent Antibody TechniqueGene SilencingHistonesHumansImage Processing, Computer-AssistedMiceATRX protein, humanDNA HelicasesDNA PrimersHistonesNuclear ProteinsX-linked Nuclear ProteinATRXcrystal structureH3K9me3S10phheterochromatinneuron

Identifiers

PMID25538301
PMCPMC4460490
OpenAlexW2154486254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.