Evidence map›Paper›PMID 25537637›Full record

ArticleBiochemistry2015

TtOmp85, a β-barrel assembly protein, functions by barrel augmentation.

Luisa Estrada Mallarino, Enguo Fan, Meike Odermatt, Matthias Müller, MeiShan Lin, Jie Liang, Martin Heinzelmann, Fenja Fritsche, Hans-Jürgen Apell, Wolfram Welte

Open access · bronzeAbstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Outer membrane permeability: Antimicrobials and diverse nutrients bypass porins inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Interplay of protein primary sequence, lipid membrane, and chaperone in β-barrel assembly.Protein science : a publication of the Protein Society · 2021
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. The β-barrel assembly machinery in motion.Nature reviews. Microbiology · 2017
    Review
  13. Skp is a multivalent chaperone of outer-membrane proteins.Nature structural & molecular biology · 2016
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Luisa Estrada MallarinoDepartment of Biology, University of Konstanz , Universitätsstraße 10, 78457 Konstanz, Germany.
Enguo Fan
Meike Odermatt
Matthias Müller
MeiShan Lin
Jie Liang
Martin Heinzelmann
Fenja Fritsche
Hans-Jürgen Apell
Wolfram Welte
University of Konstanz · DEUniversity of Freiburg · DEUniversity of Illinois Chicago · US

Funding

Computational assembly of beta-barrel membrane proteinsR01GM079804 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LIANG, JIE · 2007 to 2016
$2.8M
NIGMS NIH HHS GM079804NIGMS NIH HHS R01 GM079804
6 · The paper itself

Abstract

Outer membrane proteins are vital for Gram-negative bacteria and organisms that inherited organelles from them. Proteins from the Omp85/BamA family conduct the insertion of membrane proteins into the outer membrane. We show that an eight-stranded outer membrane β-barrel protein, TtoA, is inserted and folded into liposomes by an Omp85 homologue. Furthermore, we recorded the channel conductance of this Omp85 protein in black lipid membranes, alone and in the presence of peptides comprising the sequence of the two N-terminal and the two C-terminal β-strands of TtoA. Only with the latter could a long-living compound channel that exhibits conductance levels higher than those of the Omp85 protein alone be observed. These data support a model in which unfolded outer membrane protein after docking with its C-terminus penetrates into the transmembrane β-barrel of the Omp85 protein and augments its β-sheet at the first strand. Augmentation with successive β-strands leads to a compound, dilated barrel of both proteins.

Indexed as

Bacterial Outer Membrane ProteinsCell MembraneIon Channel GatingModels, MolecularPeptidesProtein FoldingProtein Structure, SecondaryProteolipidsThermodynamicsThermus thermophilusBacterial Outer Membrane ProteinsPeptidesProteolipidsproteoliposomes

Identifiers

PMID25537637
PMCPMC4310625
OpenAlexW2079111853

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.