ArticlePloS one2014
Dynamic quantitative trait locus analysis of seed vigor at three maturity stages in rice.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 39 citations in OpenAlex.
- Natural variation inScience advances · 2026Article
- Dynamic QTL mapping reveals the genetic architecture of stem diameter across developmental stages in foxtail millet.Planta · 2025Article
- Identification of major QTLs for seed vigor and growth-related traits using a biparental population in soybean.Frontiers in genetics · 2025Article
- Integrated Transcriptomic and Metabolomic Analyses Identify Critical Genes and Metabolites Associated with Seed Vigor of Common Wheat.International journal of molecular sciences · 2023Article
- Integrating Association Mapping, Linkage Mapping, Fine Mapping with RNA Seq Conferring Seedling Vigor Improvement for Successful Crop Establishment in Deep Sown Direct-Seeded Rice.Rice (New York, N.Y.) · 2023Article
- Mapping the Genomic Regions Controlling Germination Rate and Early Seedling Growth Parameters in Rice.Genes · 2023Article
- Meta-analysis of QTLs and candidate genes associated with seed germination in rice (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.Plant biotechnology journal · 2022Article
- Review
- GWAS and transcriptome analysis reveal MADS26 involved in seed germination ability in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Analysis of gene expression in early seed germination of rice: landscape and genetic regulation.BMC plant biology · 2022Article
- Unraveling the genomic regions controlling the seed vigour index, root growth parameters and germination per cent in rice.PloS one · 2022Article
- Construction of Three High-Density Genetic Linkage Maps and Dynamic QTL Mapping of Growth Traits in Yellow River Carp (Current issues in molecular biology · 2021Article
- Advances in the Identification of Quantitative Trait Loci and Genes Involved in Seed Vigor in Rice.Frontiers in plant science · 2021Review
- Association of molecular markers with physio-biochemical traits related to seed vigour in rice.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigour through mediating crosstalk between auxin and abscisic acid in rice.Plant biotechnology journal · 2020Article
- Article
- Heterotic patterns of primary and secondary metabolites in the oilseed crop Brassica juncea.Heredity · 2019Article
- Quantitative Trait Locus Analysis of Seed Germination and Early Seedling Growth in Rice.Frontiers in plant science · 2019Article
- Effects of Nitrogen Level during Seed Production on Wheat Seed Vigor and Seedling Establishment at the Transcriptome Level.International journal of molecular sciences · 2018Article
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Seed vigor is an important characteristic of seed quality. In this study, one rice population of recombinant inbred lines (RILs) was used to determine the genetic characteristics of seed vigor, including the germination potential, germination rate, germination index and time for 50% of germination, at 4 (early), 5 (middle) and 6 weeks (late) after heading in two years. A total of 24 additive and 9 epistatic quantitative trait loci (QTL) for seed vigor were identified using QTL Cartographer and QTLNetwork program respectively in 2012; while 32 simple sequence repeat (SSR) markers associated with seed vigor were detected using bulked segregant analysis (BSA) in 2013. The additive, epistatic and QTL × development interaction effects regulated the dry maturity developmental process to improve seed vigor in rice. The phenotypic variation explained by each additive, epistatic QTL and QTL × development interaction ranged from 5.86 to 40.67%, 4.64 to 11.28% and 0.01 to 1.17%, respectively. The QTLs were rarely co-localized among the different maturity stages; more QTLs were expressed at the early maturity stage followed by the late and middle stages. Twenty additive QTLs were stably expressed in two years which might play important roles in establishment of seed vigor in different environments. By comparing chromosomal positions of these stably expressed additive QTLs with those previously identified, the regions of QTL for seed vigor are likely to coincide with QTL for grain size, low temperature germinability and seed dormancy; while 5 additive QTL might represent novel genes. Using four selected RILs, three cross combinations of seed vigor for the development of RIL populations were predicted; 19 elite alleles could be pyramided by each combination.
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