Evidence map›Paper›PMID 25536293›Full record

ArticleJournal of molecular biology2015

Assembly states of FliM and FliG within the flagellar switch complex.

Ria Sircar, Peter P Borbat, Michael J Lynch, Jaya Bhatnagar, Matthew S Beyersdorf, Christopher J Halkides, Jack H Freed, Brian R Crane

Abstract read
In one paragraph

Article in Journal of molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

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  11. Structural diversity in the Mycobacteria DUF3349 superfamily.Protein science : a publication of the Protein Society · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ria SircarDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Peter P BorbatDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA; National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, NY 14853, USA.
Michael J LynchDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Jaya BhatnagarDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Matthew S BeyersdorfDepartment of Chemistry and Biochemistry, Unversity of North Carolina Wilmington, Wilmington, NC 28403, USA.
Christopher J HalkidesDepartment of Chemistry and Biochemistry, Unversity of North Carolina Wilmington, Wilmington, NC 28403, USA.
Jack H FreedDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA; National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, NY 14853, USA.
Brian R CraneDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA. Electronic address: bc69@cornell.edu.
Cornell University · USUniversity of North Carolina Wilmington · US

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
TR&D 4 for ACERT, 2017-2021 funding periodP41GM103521 · NIGMS · CORNELL UNIVERSITY · PI FREED, JACK H · 2012 to 2021
$11.7M
Structure and Mechanism of the Flagellar Switch ComplexR01GM064664 · NIGMS · UNIVERSITY OF UTAH · PI BLAIR, DAVID F., CRANE, BRIAN R · 2003 to 2017
$4.1M
ELECTRON-SPIN RELAXATION IN MODEL MEMBRANESR01GM025862 · NIGMS · CORNELL UNIVERSITY ITHACA · PI FREED, JACK H · 1985 to 2002
$941k
Synthesis of phosphono-CheY and phosphono-VHRR15GM063514 · NIGMS · UNIVERSITY OF NORTH CAROLINA WILMINGTON · PI HALKIDES, CHRISTOPHER JOHN · 2003 to 2010
$356k
NIGMS NIH HHS P41 GM103485NIGMS NIH HHS P41 GM103521NIGMS NIH HHS P41GM103521NIGMS NIH HHS R01 GM064664NIGMS NIH HHS R01 GM604664NIGMS NIH HHS R15 GM063514
6 · The paper itself

Abstract

At the base of the bacterial flagella, a cytoplasmic rotor (the C-ring) generates torque and reverses rotation sense in response to stimuli. The bulk of the C-ring forms from many copies of the proteins FliG, FliM, and FliN, which together constitute the switch complex. To help resolve outstanding issues regarding C-ring architecture, we have investigated interactions between FliM and FliG from Thermotoga maritima with X-ray crystallography and pulsed dipolar ESR spectroscopy (PDS). A new crystal structure of an 11-unit FliG:FliM complex produces a large arc with a curvature consistent with the dimensions of the C-ring. Previously determined structures along with this new structure provided a basis to test switch complex assembly models. PDS combined with mutational studies and targeted cross-linking reveal that FliM and FliG interact through their middle domains to form both parallel and antiparallel arrangements in solution. Residue substitutions at predicted interfaces disrupt higher-order complexes that are primarily mediated by contacts between the C-terminal domain of FliG and the middle domain of a neighboring FliG molecule. Spin separations among multi-labeled components fit a self-consistent model that agree well with electron microscopy images of the C-ring. An activated form of the response regulator CheY destabilizes the parallel arrangement of FliM molecules to perturb FliG alignment in a process that may reflect the onset of rotation switching. These data suggest a model of C-ring assembly in which intermolecular contacts among FliG domains provide a template for FliM assembly and cooperative transitions.

Indexed as

Bacterial ProteinsCrystallography, X-RayElectron Spin Resonance SpectroscopyFlagellaMicroscopy, ElectronModels, MolecularMultiprotein ComplexesProtein BindingProtein Structure, TertiarySpin LabelsThermotoga maritimaBacterial ProteinsFlig protein, BacteriaFliM protein, BacteriaFliN protein, BacteriaMultiprotein ComplexesSpin Labelschemotaxisflagella motorprotein–protein interactionssignal transductionX-ray crystallography

Identifiers

PMID25536293
PMCPMC4323944
OpenAlexW2109654828

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.