Evidence map›Paper›PMID 25536158›Full record

ArticlePloS one2014

The SNP rs3128965 of HLA-DPB1 as a genetic marker of the AERD phenotype.

Seung-Hyun Kim, Bo-Young Cho, Hyunna Choi, Eun-Soon Shin, Young-Min Ye, Jong-Eun Lee, Hae-Sim Park

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Biomolecules · 2020
    Article
  5. Review
  6. Lessons Learned From GWAS of Asthma.Allergy, asthma & immunology research · 2019
    Review
  7. Frontiers in genetics · 2018
    Article
  8. Article
  9. Review
  10. Genetic and Epigenetic Components of Aspirin-Exacerbated Respiratory Disease.Immunology and allergy clinics of North America · 2016
    Review
  11. Review
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Seung-Hyun KimDepartment of Allergy & Clinical Immunology, Ajou University School of Medicine, Suwon, Korea.
Bo-Young ChoDepartment of Allergy & Clinical Immunology, Ajou University School of Medicine, Suwon, Korea.
Hyunna ChoiDepartment of Allergy & Clinical Immunology, Ajou University School of Medicine, Suwon, Korea.
Eun-Soon ShinDNA link, Inc., Seoul, Korea.
Young-Min YeDepartment of Allergy & Clinical Immunology, Ajou University School of Medicine, Suwon, Korea.
Jong-Eun LeeDNA link, Inc., Seoul, Korea.
Hae-Sim ParkDepartment of Allergy & Clinical Immunology, Ajou University School of Medicine, Suwon, Korea.
Ajou University · KRDNA Link (South Korea) · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTwo common clinical syndromes of acetylsalicylic acid (aspirin) hypersensitivity, aspirin-exacerbated respiratory disease (AERD) and aspirin-exacerbated cutaneous disease (AECD), were subjected to a genome-wide association study to identify strong genetic markers for aspirin hypersensitivity in a Korean population.

methodsA comparison of SNP genotype frequencies on an Affymetrix Genome-Wide Human SNP array of 179 AERD patients and 1989 healthy normal control subjects (NC) revealed SNPs on chromosome 6 that were associated with AERD, but not AECD. To validate the association, we enrolled a second cohort comprising AERD (n = 264), NC (n = 238) and disease-control (aspirin tolerant asthma; ATA, n = 387) groups.

resultsThe minor genotype frequency (AG or AA) of a particular SNP, rs3128965, in the HLA-DPB1 region was higher in the AERD group compared to the ATA or NC group (P = 0.001, P = 0.002, in a co-dominant analysis model, respectively). Comparison of rs3128965 alleles with the clinical features of asthmatics revealed that patients harboring the A allele had increased bronchial hyperresponsiveness to inhaled aspirin and methacholine, and higher 15-HETE levels, than those without the A allele (P = 0.039, 0.037, and 0.004, respectively).

conclusionsThis implies the potential of rs3128965 as a genetic marker for diagnosis and prediction of the AERD phenotype.

Indexed as

Genetic Predisposition to DiseaseAdultAsthma, Aspirin-InducedFemaleGenetic MarkersGenome, HumanGenome-Wide Association StudyHLA-DP beta-ChainsHumansMaleMiddle AgedPhenotypePolymorphism, Single NucleotideGenetic MarkersHLA-DPB1 antigenHLA-DP beta-Chains

Identifiers

PMID25536158
PMCPMC4275175
OpenAlexW2072880681

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.