Evidence map›Paper›PMID 25536157›Full record

ArticleGut microbes2014

T lymphocytes control microbial composition by regulating the abundance of Vibrio in the zebrafish gut.

Sylvia Brugman, Kerstin Schneeberger, Merlijn Witte, Mark R Klein, Bartholomeus van den Bogert, Jos Boekhorst, Harro M Timmerman, Marianne L Boes, Michiel Kleerebezem, Edward E S Nieuwenhuis

Open access · bronzeAbstract read
In one paragraph

Article in Gut microbes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. The role of animal hosts in shaping gut microbiome variation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. B-cell-specificFrontiers in immunology · 2023
    Article
  13. Article
  14. Article
  15. Review
  16. Application of zebrafish in the study of the gut microbiome.Animal models and experimental medicine · 2022
    Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Sylvia Brugmana Department of Paediatric Gastroenterology, Wilhelmina Children's Hospital , University Medical Centre Utrecht , Utrecht , The Netherlands.
Kerstin Schneeberger
Merlijn Witte
Mark R Klein
Bartholomeus van den Bogert
Jos Boekhorst
Harro M Timmerman
Marianne L Boes
Michiel Kleerebezem
Edward E S Nieuwenhuis
Wilhelmina Children's Hospital · NLNederlands Instituut Voor Zuivel Oonderzoek · NLUniversity Medical Center Utrecht · NLWageningen University & Research · NLRoyal Netherlands Academy of Arts and Sciences · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dysbiosis of the intestinal microbial community is considered a risk factor for development of chronic intestinal inflammation as well as other diseases such as diabetes, obesity and even cancer. Study of the innate and adaptive immune pathways controlling bacterial colonization has however proven difficult in rodents, considering the extensive cross-talk between bacteria and innate and adaptive immunity. Here, we used the zebrafish to study innate and adaptive immune processes controlling the microbial community. Zebrafish lack a functional adaptive immune system in the first weeks of life, enabling study of the innate immune system in the absence of adaptive immunity. We show that in wild type zebrafish, the initial lack of adaptive immunity associates with overgrowth of Vibrio species (a group encompassing fish and human pathogens), which is overcome upon adaptive immune development. In Rag1-deficient zebrafish (lacking adaptive immunity) Vibrio abundance remains high, suggesting that adaptive immune processes indeed control Vibrio species. Using cell transfer experiments, we confirm that adoptive transfer of T lymphocytes, but not B lymphocytes into Rag1-deficient recipients suppresses outgrowth of Vibrio. In addition, ex vivo exposure of intestinal T lymphocytes to Rag1-deficient microbiota results in increased interferon-gamma expression by these T lymphocytes, compared to exposure to wild type microbiota. In conclusion, we show that T lymphocytes control microbial composition by effectively suppressing the outgrowth of Vibrio species in the zebrafish intestine.

Indexed as

Adaptive ImmunityAnimalsBacteriaDisease Models, AnimalGastrointestinal TractHumansImmunity, InnateT-LymphocytesVibrioVibrio InfectionsZebrafishlymphocytes, microbiota, mucosal immunity, Vibrio, zebrafishwpf: weeks post fertilization

Identifiers

PMID25536157
PMCPMC4615293
OpenAlexW2112902567

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.