Evidence map›Paper›PMID 25535918›Full record

ArticleDevelopmental cell2014

Sex- and tissue-specific functions of Drosophila doublesex transcription factor target genes.

Emily Clough, Erin Jimenez, Yoo-Ah Kim, Cale Whitworth, Megan C Neville, Leonie U Hempel, Hania J Pavlou, Zhen-Xia Chen, David Sturgill, Ryan K Dale and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 165 citations in OpenAlex.

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  10. Dmrt2 regulates sex-biased neuronal development in the cingulate cortex.Cellular and molecular life sciences : CMLS · 2025
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  11. Functional genetic elements of a butterfly mimicry supergene.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  14. Tissue-specific metabolomic signatures for aRoyal Society open science · 2025
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  15. Article
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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Emily CloughNational Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
Erin JimenezDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218, USA.
Yoo-Ah KimComputational Biology Branch, NCBI, NLM, NIH, Bethesda, MD 20814, USA.
Cale WhitworthNational Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA; Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA. Electronic address: cale.whitworth@nih.gov.
Megan C NevilleDepartment of Physiology, Anatomy, and Genetics, University of Oxford, Oxford OX1 3PT, UK.
Leonie U HempelNational Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
Hania J PavlouDepartment of Physiology, Anatomy, and Genetics, University of Oxford, Oxford OX1 3PT, UK.
Zhen-Xia ChenNational Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
David SturgillNational Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
Ryan K DaleNational Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
Harold E SmithNational Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
Teresa M PrzytyckaComputational Biology Branch, NCBI, NLM, NIH, Bethesda, MD 20814, USA.
Stephen F GoodwinDepartment of Physiology, Anatomy, and Genetics, University of Oxford, Oxford OX1 3PT, UK.
Mark Van DorenDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218, USA.
Brian OliverNational Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
National Institute of Diabetes and Digestive and Kidney Diseases · USUniversity of Oxford · GBJohns Hopkins University · USNational Center for Biotechnology Information · US

Funding

Chromatin Structure and Gene ExpressionZIABC005450 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HAGER, GORDON L · 2009 to 2025
$35.2M
Combinatorial and graph theoretical approach to systems biology and mol. evo.ZIALM200887 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PRZYTYCKA, TERESA · 2009 to 2025
$24.4M
Drosophila Functional GenomicsZIADK015600 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI OLIVER, BRIAN · 2009 to 2025
$23.9M
Genomics Core FacilityZICDK071001 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI HANOVER, JOHN A. · 2009 to 2023
$16.6M
Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Whole-genome analysis of direct Doublesex target genesR21HD066244 · NICHD · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 2011 to 2012
$369k
A genomic analysis of doublesex function in sex determinationF31HD076558 · NICHD · JOHNS HOPKINS UNIVERSITY · PI JIMENEZ, ERIN ALISA · 2013 to 2015
$110k
Intramural NIH HHS ZIA DK015600NICHD NIH HHS F31 HD076558NICHD NIH HHS R21 HD066244NIH HHS P40 OD018537Wellcome Trust 090309
6 · The paper itself

Abstract

Primary sex-determination "switches" evolve rapidly, but Doublesex (DSX)-related transcription factors (DMRTs) act downstream of these switches to control sexual development in most animal species. Drosophila dsx encodes female- and male-specific isoforms (DSX(F) and DSX(M)), but little is known about how dsx controls sexual development, whether DSX(F) and DSX(M) bind different targets, or how DSX proteins direct different outcomes in diverse tissues. We undertook genome-wide analyses to identify DSX targets using in vivo occupancy, binding site prediction, and evolutionary conservation. We find that DSX(F) and DSX(M) bind thousands of the same targets in multiple tissues in both sexes, yet these targets have sex- and tissue-specific functions. Interestingly, DSX targets show considerable overlap with targets identified for mouse DMRT1. DSX targets include transcription factors and signaling pathway components providing for direct and indirect regulation of sex-biased expression.

Indexed as

Gene Expression RegulationAnimalsAnimals, Genetically ModifiedBinding SitesDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalGenomeGenome-Wide Association StudyMaleMicePhenotypeRNA InterferenceDMRT1 proteinDNA-Binding ProteinsDrosophila ProteinsDSX protein, DrosophilaTranscription Factors

Identifiers

PMID25535918
PMCPMC4275658
OpenAlexW1996332055

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.