Evidence map›Paper›PMID 25535763›Full record

ReviewACS chemical biology2015

Structural basis for regulation of RNA-binding proteins by phosphorylation.

Roopa Thapar

Abstract readReview
In one paragraph

Review in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. mMolecules and cells · 2022
    Review
  13. Review
  14. Article
  15. Targeting transcription cycles in cancer.Nature reviews. Cancer · 2022
    Review
  16. Stem-loop binding protein and metal carcinogenesis.Seminars in cancer biology · 2021
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Roopa ThaparBioSciences at Rice, Biochemistry and Cell Biology, Rice University, Houston, Texas 77251-1892, United States.
Rice University · US

Funding

Phosphorylation dependent recognition of a histone mRNA hairpin by SLBPR01GM076660 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MARZLUFF, WILLIAM F. · 2006 to 2009
$1.1M
NIGMS NIH HHS 1R01-GM076660NIGMS NIH HHS 1R01-GM076660-S1NIGMS NIH HHS R01 GM076660
6 · The paper itself

Abstract

Ribonucleoprotein complexes involved in pre-mRNA splicing and mRNA decay are often regulated by phosphorylation of RNA-binding proteins. Cells use phosphorylation-dependent signaling pathways to turn on and off gene expression. Not much is known about how phosphorylation-dependent signals transmitted by exogenous factors or cell cycle checkpoints regulate RNA-mediated gene expression at the atomic level. Several human diseases are linked to an altered phosphorylation state of an RNA binding protein. Understanding the structural response to the phosphorylation "signal" and its effect on ribonucleoprotein assembly provides mechanistic understanding, as well as new information for the design of novel drugs. In this review, I highlight recent structural studies that reveal the mechanisms by which phosphorylation can regulate protein-protein and protein-RNA interactions in ribonucleoprotein complexes.

Indexed as

RNA SplicingAmino Acid SequenceAnimalsDNA-Binding ProteinsHumansModels, MolecularMolecular Sequence DatamRNA Cleavage and Polyadenylation FactorsNuclear ProteinsPhosphorylationProtein ConformationRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA Splicing FactorsRNA StabilityDNA-Binding ProteinsKHSRP protein, humanmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA Splicing FactorsSerine-Arginine Splicing FactorsSF1 protein, humanSLBP protein, humanSRSF1 protein, humanTrans-ActivatorsTranscription Factors

Identifiers

PMID25535763
PMCPMC4372107
OpenAlexW2314592746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.