Evidence map›Paper›PMID 25535369›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Hooking She3p onto She2p for myosin-mediated cytoplasmic mRNA transport.

Nimisha Singh, Günter Blobel, Hang Shi

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nimisha SinghHoward Hughes Medical Institute and Laboratory of Cell Biology, The Rockefeller University, New York, NY 10065.
Günter BlobelHoward Hughes Medical Institute and Laboratory of Cell Biology, The Rockefeller University, New York, NY 10065 hshi@mail.rockefeller.edu blobel@rockefeller.edu.
Hang ShiHoward Hughes Medical Institute and Laboratory of Cell Biology, The Rockefeller University, New York, NY 10065 hshi@mail.rockefeller.edu blobel@rockefeller.edu.

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
UPGRADE OF IN-HOUSE X-RAY DIFFRACTION EQUIPMENT: STRUCTURAL BIOLOGYS10RR022321 · NCRR · ROCKEFELLER UNIVERSITY · PI DARST, SETH A. · 2006 to 2006
$330k
Crystallization Robot for the Structural Biology Resource Center at RockefellerS10RR027037 · NCRR · ROCKEFELLER UNIVERSITY · PI OREN, DEENA ABELLS · 2010 to 2010
$147k
Howard Hughes Medical InstituteNCRR NIH HHS 1S10RR022321-01NCRR NIH HHS 1S10RR027037-01NCRR NIH HHS S10 RR022321NCRR NIH HHS S10 RR027037NIGMS NIH HHS P41 GM111244
6 · The paper itself

Abstract

The segregation of approximately two dozen distinct mRNAs from yeast mother to daughter cell cytoplasm is a classical paradigm for eukaryotic mRNA transport. The information for transport resides in an mRNA element 40-100 nt in length, known as "zipcode." Targeted transport requires properly positioned actin filaments and cooperative loading of mRNA cargo to myosin. Cargo loading to myosin uses myosin 4 protein (Myo4p), swi5p-dependent HO expression 2 protein (She2p) and 3 protein (She3p), and zipcode. We previously determined a crystal structure of Myo4p and She3p, their 1:2 stoichiometry and interactome; we furthermore showed that the motor complex assembly requires two Myo4p⋅She3p heterotrimers, one She2p tetramer, and at least a single zipcode to yield a stable complex of [Myo4p⋅She3p⋅She2p⋅zipcode] in 2:4:4:1 stoichiometry in vitro. Here, we report a structure at 2.8-Å resolution of a cocrystal of a She2p tetramer bound to a segment of She3p. In this crystal structure, the She3p segment forms a striking hook that binds to a shallow hydrophobic pocket on the surface of each She2p subunit of the tetramer. Both She3p hook and cognate She2p binding pocket are composed of highly conserved residues. We also discovered a highly conserved region of She3p upstream of its hook region. Because this region consists of basic and aromatic residues, it likely represents part of She3p's binding activity for zipcode. Because She2p also exhibits zipcode-binding activity, we suggest that "hooking" She3p onto She2p aligns each of their zipcode-binding activities into a high-affinity site, thereby linking motor assembly to zipcode.

Indexed as

RNA TransportAmino AcidsAmino Acid SequenceBinding SitesCrystallography, X-RayCytoplasmModels, MolecularMolecular Sequence DataMyosinsPeptidesProtein BindingProtein ConformationRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsAmino AcidsMyosinsPeptidesRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsSHE2 protein, S cerevisiaeSHE3 protein, S cerevisiaecrystal structureLPGV hookmotor assemblytype II turn

Identifiers

PMID25535369
PMCPMC4291644

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.