Evidence map›Paper›PMID 25535270›Full record

ArticleJournal of bacteriology2015

Activation of the σE-dependent stress pathway by conjugative TraR may anticipate conjugational stress.

Elicia D Grace, Saumya Gopalkrishnan, Mary E Girard, Matthew D Blankschien, Wilma Ross, Richard L Gourse, Christophe Herman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Transcriptional Responses to ppGpp and DksA.Annual review of microbiology · 2018
    Review
  11. Review
  12. Article
  13. TraR directly regulates transcription initiation by mimicking the combined effects of the global regulators DksA and ppGpp.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Elicia D GraceDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA.
Saumya GopalkrishnanDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Mary E GirardDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA.
Matthew D BlankschienDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Wilma RossDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Richard L GourseDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID http://orcid.org/0000-0002-9675-5314
Christophe HermanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA herman@bcm.edu.
Baylor College of Medicine · USUniversity of Wisconsin–Madison · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
Virology CoreP30AI036211 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BUTEL, JANET S · 1994 to 2015
$21.7M
Mechanism, Activation, and Control of rRNA TranscriptionR37GM037048 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GOURSE, RICHARD L. · 2007 to 2016
$6.6M
Molecular Noise, Transcription Errors and Heritable Phenotypic ChangeR01GM088653 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI HERMAN, CHRISTOPHE · 2010 to 2019
$3.1M
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
NCI NIH HHS P30 CA125123NCRR NIH HHS S10 RR024574NIAID NIH HHS P30 AI036211NIGMS NIH HHS 1R01GM088653NIGMS NIH HHS R01 GM088653NIGMS NIH HHS R37 GM037048NIGMS NIH HHS R37 GM37048
6 · The paper itself

Abstract

Horizontal gene transfer by conjugation plays a major role in bacterial evolution, allowing the acquisition of new traits, such as virulence and resistance to antibacterial agents. With the increased antibiotic resistance in bacterial pathogens, a better understanding of how bacteria modulate conjugation under changing environments and the genetic factors involved is needed. Despite the evolutionary advantages conjugation may confer, the process can be quite stressful for the donor cell. Here, we characterize the ability of TraR, encoded on the episomal F' plasmid, to upregulate the σ(E) extracytoplasmic stress pathway in Escherichia coli. TraR, a DksA homolog, modulates transcription initiation through the secondary channel of RNA polymerase. We show here that TraR activates transcription directly; however, unlike DksA, it does so without using ppGpp as a cofactor. TraR expression can stimulate the σ(E) extracytoplasmic stress response independently of the DegS/RseA signal transduction cascade. In the absence of TraR, bacteria carrying conjugative plasmids become more susceptible to external stress. We propose that TraR increases the concentrations of periplasmic chaperones and proteases by directly activating the transcription of σ(E)-dependent promoters; this increased protein folding capacity may prepare the bacterium to endure the periplasmic stress of sex pilus biosynthesis during mating.

Indexed as

Conjugation, GeneticUp-RegulationEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialOperonPromoter Regions, GeneticSigma FactorStress, PhysiologicalTranscriptional ActivationTranscription FactorsEscherichia coli ProteinsSigma Factorsporulation-specific sigma factorsTranscription FactorsTraR protein, E coli

Identifiers

PMID25535270
PMCPMC4325106
OpenAlexW2022492915

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.