Evidence map›Paper›PMID 25535248›Full record

ArticleThe EMBO journal2015

Agonist and antagonist switch DNA motifs recognized by human androgen receptor in prostate cancer.

Zhong Chen, Xun Lan, Jennifer M Thomas-Ahner, Dayong Wu, Xiangtao Liu, Zhenqing Ye, Liguo Wang, Benjamin Sunkel, Cassandra Grenade, Junsheng Chen and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 94 citations in OpenAlex.

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  13. Androgen conspires with the CD8Science immunology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 1 country.

Zhong ChenDepartment of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA.
Xun LanDepartment of Biomedical Informatics, The Ohio State University College of Medicine, Columbus, OH, USA.
Jennifer M Thomas-AhnerDivision of Medical Oncology, Department of Internal Medicine and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA.
Dayong WuDepartment of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA.
Xiangtao LiuDepartment of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA.
Zhenqing YeDepartment of Biomedical Informatics, The Ohio State University College of Medicine, Columbus, OH, USA Department of Molecular Medicine, Cancer Therapy and Research Center, University of Texas Health Science Center, San Antonio, TX, USA.
Liguo WangDivision of Biostatistics, Dan L. Duncan Cancer Center Baylor College of Medicine, Houston, TX, USA Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Benjamin SunkelDepartment of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA.
Cassandra GrenadeDepartment of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA.
Junsheng ChenDivision of Biostatistics, Dan L. Duncan Cancer Center Baylor College of Medicine, Houston, TX, USA Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Debra L ZyngerDepartment of Pathology, The Ohio State University College of Medicine, Columbus, OH, USA.
Pearlly S YanDepartment of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA.
Jiaoti HuangDepartments of Pathology and Urology, Jonsson Comprehensive Cancer Center, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA Broad Center for Regenerative Medicine and Stem Cell Research, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
Kenneth P NephewMedical Sciences Program, Department of Cellular and Integrative Physiology, Indiana University School of Medicine, Bloomington, IN, USA.
Tim H-M HuangDepartment of Molecular Medicine, Cancer Therapy and Research Center, University of Texas Health Science Center, San Antonio, TX, USA.
Shili LinDepartment of Statistics, The Ohio State University, Columbus, OH, USA.
Steven K ClintonDivision of Medical Oncology, Department of Internal Medicine and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA.
Wei LiDivision of Biostatistics, Dan L. Duncan Cancer Center Baylor College of Medicine, Houston, TX, USA Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Victor X JinDepartment of Biomedical Informatics, The Ohio State University College of Medicine, Columbus, OH, USA Department of Molecular Medicine, Cancer Therapy and Research Center, University of Texas Health Science Center, San Antonio, TX, USA.
Qianben WangDepartment of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA qianben.wang@osumc.edu.
The Ohio State University · USBaylor College of Medicine · USThe University of Texas Health Science Center at San Antonio · USBroad Center · USIndiana University Bloomington · US

Funding

Predicting Drug Resistance in Cancer Genomes by DMA Methylation ProfilingU54CA113001 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HUANG, TIM H.-M. · 2004 to 2014
$16.1M
ONOCOLOGY TRAINING GRANTT32CA009338 · NCI · OHIO STATE UNIVERSITY · PI BYRD, JOHN C., POLLOCK, RAPHAEL E. · 1985 to 2018
$8.3M
Regulation of androgen receptor function by H3K4 methylation in prostate cancerR01CA151979 · NCI · OHIO STATE UNIVERSITY · PI WANG, QIANBEN · 2011 to 2015
$1.6M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA151979NCI NIH HHS R01CA151979NCI NIH HHS T32 CA009338NCI NIH HHS T32CA009338NCI NIH HHS U54 CA113001NCI NIH HHS U54CA113001
6 · The paper itself

Abstract

Human transcription factors recognize specific DNA sequence motifs to regulate transcription. It is unknown whether a single transcription factor is able to bind to distinctly different motifs on chromatin, and if so, what determines the usage of specific motifs. By using a motif-resolution chromatin immunoprecipitation-exonuclease (ChIP-exo) approach, we find that agonist-liganded human androgen receptor (AR) and antagonist-liganded AR bind to two distinctly different motifs, leading to distinct transcriptional outcomes in prostate cancer cells. Further analysis on clinical prostate tissues reveals that the binding of AR to these two distinct motifs is involved in prostate carcinogenesis. Together, these results suggest that unique ligands may switch DNA motifs recognized by ligand-dependent transcription factors in vivo. Our findings also provide a broad mechanistic foundation for understanding ligand-specific induction of gene expression profiles.

Indexed as

Androgen Receptor AntagonistsAndrogensCell ProliferationChromatin ImmunoprecipitationDNAElectrophoretic Mobility Shift AssayHumansMaleProstatic NeoplasmsReceptors, AndrogenReverse Transcriptase Polymerase Chain ReactionAndrogen Receptor AntagonistsAndrogensAR protein, humanDNAReceptors, Androgenandrogen receptorChIP‐exoDNA motif switchingprostate cancertranscription factor

Identifiers

PMID25535248
PMCPMC4331004
OpenAlexW2128251898

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.