Evidence map›Paper›PMID 25534741›Full record

ArticleAntimicrobial agents and chemotherapy2015

Targeting Mycobacterium tuberculosis topoisomerase I by small-molecule inhibitors.

Adwait Anand Godbole, Wareed Ahmed, Rajeshwari Subray Bhat, Erin K Bradley, Sean Ekins, Valakunja Nagaraja

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Article
  3. Evaluation of Amlodipine and Imipramine Efficacy to TreatAntibiotics (Basel, Switzerland) · 2025
    Article
  4. Small Molecule Inhibitors ofInternational journal of molecular sciences · 2024
    Article
  5. Review
  6. MedComm · 2023
    Review
  7. Article
  8. Target Identification in Anti-Tuberculosis Drug Discovery.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Localization ofFrontiers in microbiology · 2022
    Article
  18. Review
  19. Review
  20. Targeting Genome Integrity inMolecules (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Adwait Anand GodboleDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Wareed AhmedDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Rajeshwari Subray BhatDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Erin K BradleyLigDCipher, San Mateo, California, USA.
Sean EkinsCollaborative Drug Discovery, Burlingame, California, USA.
Valakunja NagarajaDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India vraj@mcbl.iisc.ernet.in.
Indian Institute of Science Bangalore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe inhibition of Mycobacterium tuberculosis topoisomerase I (MttopoI), an essential mycobacterial enzyme, by two related compounds, imipramine and norclomipramine, of which imipramine is clinically used as an antidepressant. These molecules showed growth inhibition of both Mycobacterium smegmatis and M. tuberculosis cells. The mechanism of action of these two molecules was investigated by analyzing the individual steps of the topoisomerase I (topoI) reaction cycle. The compounds stimulated cleavage, thereby perturbing the cleavage-religation equilibrium. Consequently, these molecules inhibited the growth of the cells overexpressing topoI at a low MIC. Docking of the molecules on the MttopoI model suggested that they bind near the metal binding site of the enzyme. The DNA relaxation activity of the metal binding mutants harboring mutations in the DxDxE motif was differentially affected by the molecules, suggesting that the metal coordinating residues contribute to the interaction of the enzyme with the drug. Taken together, the results highlight the potential of these small molecules, which poison the M. tuberculosis and M. smegmatis topoisomerase I, as leads for the development of improved molecules to combat mycobacterial infections. Moreover, targeting metal coordination in topoisomerases might be a general strategy to develop new lead molecules.

Indexed as

Amino Acid MotifsBacterial ProteinsBinding SitesDNADNA, BacterialDNA Topoisomerases, Type IImipramineMutationMycobacterium smegmatisMycobacterium tuberculosisSmall Molecule LibrariesTopoisomerase I InhibitorsTuberculosisBacterial ProteinsDNADNA, BacterialDNA Topoisomerases, Type IImipramineSmall Molecule LibrariesTopoisomerase I Inhibitors

Identifiers

PMID25534741
PMCPMC4325804
OpenAlexW2147093387

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.