Evidence map›Paper›PMID 25533958›Full record

ArticleNature2015

Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury.

Andrew E Vaughan, Alexis N Brumwell, Ying Xi, Jeffrey E Gotts, Doug G Brownfield, Barbara Treutlein, Kevin Tan, Victor Tan, Feng Chun Liu, Mark R Looney and 3 more

Abstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 457 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
457citing papers in PubMed, 1 pooled it
32.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

457 citing papers in PubMed, 1 synthesis or guideline pooled it, 707 citations in OpenAlex.

  1. Pooled it
  2. Autologous transplantation of P63Cell reports. Medicine · 2024
    Trial
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  8. Review
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  13. Influenza-induced tuft cell expansion alters ILC-mediated inflammation.bioRxiv : the preprint server for biology · 2026
    Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
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  20. Article

397 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Andrew E VaughanDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Alexis N BrumwellDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Ying XiDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Jeffrey E GottsDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Doug G BrownfieldDepartment of Biochemistry, Stanford University School of Medicine and Howard Hughes Medical Institute, Stanford, California 94305, USA.
Barbara TreutleinMax Planck Institute for Evolutionary Anthropology, Department of Evolutionary Genetics, Deutscher Platz 6, 04103 Leipzig, Germany.
Kevin TanDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Victor TanDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Feng Chun LiuDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Mark R LooneyDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Michael A MatthayDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Jason R RockDepartment of Anatomy, School of Medicine, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Harold A ChapmanDepartment of Medicine, Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, California 94143, USA.
Max Planck Institute for Evolutionary Anthropology · DE

Funding

Epithelial stem/progenitor cells as repair agents in diffuse alveolar damageU01HL134766 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHAPMAN, HAROLD A, KOTTON, DARRELL N. · 2016 to 2022
$8.1M
Interrogation of individual cells to identify progenitors and their nichesU01HL099999 · NHLBI · STANFORD UNIVERSITY · PI WEISSMAN, IRVING L. · 2009 to 2015
$7.8M
Interrogation of individual cells to identify progenitor cells and their nichesU01HL099995 · NHLBI · STANFORD UNIVERSITY · PI KRASNOW, MARK A · 2009 to 2015
$7.0M
REGULATION OF INTEGRIN FUNCTIONR01HL044712 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHAPMAN, HAROLD A · 1991 to 2014
$4.8M
Resolution of Clinical Lung InjuryR37HL051856 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MATTHAY, MICHAEL A. · 2006 to 2015
$3.9M
Epithelial Progenitor Cells in Lung Repair and RegenerationU01HL111054 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHAPMAN, HAROLD A, CHUANG, PAO-TIEN · 2012 to 2016
$3.2M
Regenerative Role of Integrin Beta4pos p63pos Distal Lung Stem/Progenitor CellsF32HL117600 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VAUGHAN, ANDREW · 2014 to 2014
$55k
Howard Hughes Medical InstituteNHLBI NIH HHS F32 HL117600NHLBI NIH HHS F32 HL117600-01NHLBI NIH HHS R01 HL044712NHLBI NIH HHS R01 HL44712NHLBI NIH HHS R37 HL051856NHLBI NIH HHS U01 HL099995NHLBI NIH HHS U01 HL099999NHLBI NIH HHS U01 HL111054NHLBI NIH HHS U01 HL134766
6 · The paper itself

Abstract

Broadly, tissue regeneration is achieved in two ways: by proliferation of common differentiated cells and/or by deployment of specialized stem/progenitor cells. Which of these pathways applies is both organ- and injury-specific. Current models in the lung posit that epithelial repair can be attributed to cells expressing mature lineage markers. By contrast, here we define the regenerative role of previously uncharacterized, rare lineage-negative epithelial stem/progenitor (LNEP) cells present within normal distal lung. Quiescent LNEPs activate a ΔNp63 (a p63 splice variant) and cytokeratin 5 remodelling program after influenza or bleomycin injury in mice. Activated cells proliferate and migrate widely to occupy heavily injured areas depleted of mature lineages, at which point they differentiate towards mature epithelium. Lineage tracing revealed scant contribution of pre-existing mature epithelial cells in such repair, whereas orthotopic transplantation of LNEPs, isolated by a definitive surface profile identified through single-cell sequencing, directly demonstrated the proliferative capacity and multipotency of this population. LNEPs require Notch signalling to activate the ΔNp63 and cytokeratin 5 program, and subsequent Notch blockade promotes an alveolar cell fate. Persistent Notch signalling after injury led to parenchymal 'micro-honeycombing' (alveolar cysts), indicative of failed regeneration. Lungs from patients with fibrosis show analogous honeycomb cysts with evidence of hyperactive Notch signalling. Our findings indicate that distinct stem/progenitor cell pools repopulate injured tissue depending on the extent of the injury, and the outcomes of regeneration or fibrosis may depend in part on the dynamics of LNEP Notch signalling.

Indexed as

Re-EpithelializationAnimalsBleomycinCell LineageCell ProliferationCell SeparationCystsEpithelial CellsFemaleHumansKeratin-5LungLung InjuryMaleMiceOrthomyxoviridae InfectionsBleomycinKeratin-5PhosphoproteinsReceptors, NotchTrans-ActivatorsTrp63 protein, mouse

Identifiers

PMID25533958
PMCPMC4312207
OpenAlexW1980544777

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.