Evidence map›Paper›PMID 25533465›Full record

ArticleThe Journal of biological chemistry2015

In vitro reassembly of the ribose ATP-binding cassette transporter reveals a distinct set of transport complexes.

Matthew C Clifton, Michael J Simon, Satchal K Erramilli, Huide Zhang, Jelena Zaitseva, Mark A Hermodson, Cynthia V Stauffacher

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Transporters of glucose and other carbohydrates in bacteria.Pflugers Archiv : European journal of physiology · 2020
    Review
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Matthew C CliftonFrom the Department of Biological Sciences and the Purdue Center for Cancer Research and.
Michael J SimonFrom the Department of Biological Sciences and the Purdue Center for Cancer Research and.
Satchal K ErramilliFrom the Department of Biological Sciences and the Purdue Center for Cancer Research and.
Huide Zhangthe Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Jelena Zaitsevathe Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Mark A Hermodsonthe Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Cynthia V StauffacherFrom the Department of Biological Sciences and the Purdue Center for Cancer Research and cstauffa@purdue.edu.
Center for Cancer Research · USPurdue University West Lafayette · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI John Tesmer · 1985 to 2026
$43.4M
Membrane Protein Structural Genomics: M. tuberculosisP01GM064676 · NIGMS · FLORIDA STATE UNIVERSITY · PI CROSS, TIMOTHY A · 2001 to 2005
$8.0M
BIOPHYS STUD OF PROTEINS, NUCLEIC ACIDS, AND VIRUSEST32GM008296 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI STAUFFACHER, CYNTHIA VIANNE · 1989 to 2012
$2.2M
STRUCTURE OF PROTEINS OF THE RIBOSE TRANSPORT SYSTEMR01GM054993 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI HERMODSON, MARK A · 1997 to 2000
$270k
NCI NIH HHS CA23168NCI NIH HHS P30 CA023168NIGMS NIH HHS GM54993NIGMS NIH HHS GM64676NIGMS NIH HHS P01 GM064676NIGMS NIH HHS T32 GM008296NIGMS NIH HHS T32-GM008296
6 · The paper itself

Abstract

Bacterial ATP-binding cassette (ABC) importers are primary active transporters that are critical for nutrient uptake. Based on structural and functional studies, ABC importers can be divided into two distinct classes, type I and type II. Type I importers follow a strict alternating access mechanism that is driven by the presence of the substrate. Type II importers accept substrates in a nucleotide-free state, with hydrolysis driving an inward facing conformation. The ribose transporter in Escherichia coli is a tripartite complex consisting of a cytoplasmic ATP-binding cassette protein, RbsA, with fused nucleotide binding domains; a transmembrane domain homodimer, RbsC2; and a periplasmic substrate binding protein, RbsB. To investigate the transport mechanism of the complex RbsABC2, we probed intersubunit interactions by varying the presence of the substrate ribose and the hydrolysis cofactors, ATP/ADP and Mg(2+). We were able to purify a full complex, RbsABC2, in the presence of stable, transition state mimics (ATP, Mg(2+), and VO4); a RbsAC complex in the presence of ADP and Mg(2+); and a heretofore unobserved RbsBC complex in the absence of cofactors. The presence of excess ribose also destabilized complex formation between RbsB and RbsC. These observations suggest that RbsABC2 shares functional traits with both type I and type II importers, as well as possessing unique features, and employs a distinct mechanism relative to other ABC transporters.

Indexed as

Adenosine DiphosphateAdenosine TriphosphateATP-Binding Cassette TransportersBiological TransportBlotting, WesternCircular DichroismElectron Spin Resonance SpectroscopyEscherichia coli ProteinsMagnesiumMembrane Transport ProteinsMultiprotein ComplexesMutationPeriplasmic Binding ProteinsProtein BindingProtein SubunitsRiboseAdenosine DiphosphateAdenosine TriphosphateATP-Binding Cassette TransportersEscherichia coli ProteinsMagnesiumMembrane Transport ProteinsMultiprotein ComplexesPeriplasmic Binding ProteinsProtein SubunitsRbsA protein, E coliRbsB protein, E coliRbsC protein, E coliRiboseABC TransporterATPaseBacterial MetabolismElectron Paramagnetic Resonance (EPR)Membrane TransportMembrane Transporter ReconstitutionRibose Transport

Identifiers

PMID25533465
PMCPMC4342470
OpenAlexW2008410344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.