Evidence map›Paper›PMID 25533464›Full record

ArticleThe Journal of biological chemistry2015

Structural and kinetic basis of steroid 17α,20-lyase activity in teleost fish cytochrome P450 17A1 and its absence in cytochrome P450 17A2.

Pradeep S Pallan, Leslie D Nagy, Li Lei, Eric Gonzalez, Valerie M Kramlinger, Caleigh M Azumaya, Zdzislaw Wawrzak, Michael R Waterman, F Peter Guengerich, Martin Egli

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Structural and Functional Evaluation of Clinically Relevant Inhibitors of Steroidogenic Cytochrome P450 17A1.Drug metabolism and disposition: the biological fate of chemicals · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Pradeep S PallanFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and.
Leslie D NagyFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and.
Li LeiFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and.
Eric GonzalezFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and.
Valerie M KramlingerFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and.
Caleigh M AzumayaFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and.
Zdzislaw Wawrzakthe Life Sciences Collaborative Access Team, Sector 21, Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439.
Michael R WatermanFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and.
F Peter GuengerichFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and f.guengerich@vanderbilt.edu.
Martin EgliFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and martin.egli@vanderbilt.edu.
Vanderbilt University · USArgonne National Laboratory · US

Funding

Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
Vanderbilt/Meharry Initiative for Minority Student DvptR25GM062459 · NIGMS · VANDERBILT UNIVERSITY · PI VELEZ EDWARDS, DIGNA R · 2002 to 2020
$10.4M
Structure and Function of P450 Enzymes in Steroid Hormone BiosynthesisR01GM103937 · NIGMS · VANDERBILT UNIVERSITY · PI EGLI, MARTIN · 2013 to 2016
$1.6M
NIEHS NIH HHS P30 ES000267NIEHS NIH HHS T32 ES007028NIGMS NIH HHS R01 GM103937NIGMS NIH HHS R25 GM062459
6 · The paper itself

Abstract

Cytochrome P450 (P450) 17A enzymes play a critical role in the oxidation of the steroids progesterone (Prog) and pregnenolone (Preg) to glucocorticoids and androgens. In mammals, a single enzyme, P450 17A1, catalyzes both 17α-hydroxylation and a subsequent 17α,20-lyase reaction with both Prog and Preg. Teleost fish contain two 17A P450s; zebrafish P450 17A1 catalyzes both 17α-hydroxylation and lyase reactions with Prog and Preg, and P450 17A2 is more efficient in pregnenolone 17α-hydroxylation but does not catalyze the lyase reaction, even in the presence of cytochrome b5. P450 17A2 binds all substrates and products, although more loosely than P450 17A1. Pulse-chase and kinetic spectral experiments and modeling established that the two-step P450 17A1 Prog oxidation is more distributive than the Preg reaction, i.e. 17α-OH product dissociates more prior to the lyase step. The drug orteronel selectively blocked the lyase reaction of P450 17A1 but only in the case of Prog. X-ray crystal structures of zebrafish P450 17A1 and 17A2 were obtained with the ligand abiraterone and with Prog for P450 17A2. Comparison of the two fish P450 17A-abiraterone structures with human P450 17A1 (DeVore, N. M., and Scott, E. E. (2013) Nature 482, 116-119) showed only a few differences near the active site, despite only ∼50% identity among the three proteins. The P450 17A2 structure differed in four residues near the heme periphery. These residues may allow the proposed alternative ferric peroxide mechanism for the lyase reaction, or residues removed from the active site may allow conformations that lead to the lyase activity.

Indexed as

Catalytic DomainAmino Acid SequenceAndrostenesAnimalsKineticsMolecular Docking SimulationMolecular Sequence DataProgesteroneProtein BindingSteroid 17-alpha-HydroxylaseZebrafishZebrafish ProteinsabirateroneAndrostenesProgesteroneSteroid 17-alpha-HydroxylaseZebrafish ProteinsCytochrome P450Enzyme KineticsPre-steady-state KineticsSteroidogenesisX-ray Crystallography

Identifiers

PMID25533464
PMCPMC4318999
OpenAlexW2122704575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.