Evidence map›Paper›PMID 25533185›Full record

ArticleMolecular cell2015

Noncovalent interactions with SUMO and ubiquitin orchestrate distinct functions of the SLX4 complex in genome maintenance.

Jian Ouyang, Elizabeth Garner, Alexander Hallet, Hai Dang Nguyen, Kimberly A Rickman, Grace Gill, Agata Smogorzewska, Lee Zou

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Ubiquitin-conjugating Enzymes in Cancer.International journal of biological sciences · 2026
    Review
  3. Article
  4. Multifaceted roles of SUMO in DNA metabolism.Nucleus (Austin, Tex.) · 2024
    Review
  5. Review
  6. SUMO and the DNA damage response.Biochemical Society transactions · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. DNA Damage Response Regulation by Histone Ubiquitination.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Coordinated roles of SLX4 and MutSβ in DNA repair and the maintenance of genome stability.Critical reviews in biochemistry and molecular biology · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jian OuyangMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Elizabeth GarnerLaboratory of Genome Maintenance, Rockefeller University, New York, NY 10065, USA.
Alexander HalletMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Hai Dang NguyenMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Kimberly A RickmanLaboratory of Genome Maintenance, Rockefeller University, New York, NY 10065, USA.
Grace GillDepartment of Developmental, Molecular, and Chemical Biology, Tufts University School of Medicine, Boston, MA 02111, USA.
Agata SmogorzewskaLaboratory of Genome Maintenance, Rockefeller University, New York, NY 10065, USA. Electronic address: agata.smogorzewska@mail.rockefeller.edu.
Lee ZouMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA; Department of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02115, USA. Electronic address: zou.lee@mgh.harvard.edu.
Massachusetts General Hospital · USRockefeller University · USHarvard University · USTufts University · US

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Regulation of the ATR Checkpoint Kinase by DNA DamageR01GM076388 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI ZOU, LEE · 2006 to 2018
$4.3M
The role of nucleases in interstrand crosslink repairR01HL120922 · NHLBI · ROCKEFELLER UNIVERSITY · PI SMOGORZEWSKA, AGATA · 2014 to 2018
$2.1M
NHLBI NIH HHS R01 HL120922NHLBI NIH HHS R01HL120922NIGMS NIH HHS GM076388NIGMS NIH HHS R01 GM076388NIGMS NIH HHS T32 GM007739NIGMS NIH HHS T32GM007739
6 · The paper itself

Abstract

SLX4, a coordinator of multiple DNA structure-specific endonucleases, is important for several DNA repair pathways. Noncovalent interactions of SLX4 with ubiquitin are required for localizing SLX4 to DNA interstrand crosslinks (ICLs), yet how SLX4 is targeted to other functional contexts remains unclear. Here, we show that SLX4 binds SUMO-2/3 chains via SUMO-interacting motifs (SIMs). The SIMs of SLX4 are dispensable for ICL repair but important for processing CPT-induced replication intermediates, suppressing fragile site instability, and localizing SLX4 to ALT telomeres. The localization of SLX4 to laser-induced DNA damage also requires the SIMs, as well as DNA end resection, UBC9, and MDC1. Furthermore, the SUMO binding of SLX4 enhances its interaction with specific DNA-damage sensors or telomere-binding proteins, including RPA, MRE11-RAD50-NBS1, and TRF2. Thus, the interactions of SLX4 with SUMO and ubiquitin increase its affinity for factors recognizing different DNA lesions or telomeres, helping to direct the SLX4 complex in distinct functional contexts.

Indexed as

GenomeAmino Acid SequenceAnimalsCell Line, TumorDNA DamageEscherichia coliGene Expression RegulationHEK293 CellsHumansMiceMolecular Sequence DataMutationProtein BindingProtein Interaction Domains and MotifsRecombinant Fusion ProteinsRecombinasesRecombinant Fusion ProteinsRecombinasesSLX4 protein, humanSmall Ubiquitin-Related Modifier ProteinsSUMO2 protein, humanSUMO3 protein, humanUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Conjugating Enzyme UBC9Ubiquitins

Identifiers

PMID25533185
PMCPMC4289429
OpenAlexW2164786387

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.