Evidence map›Paper›PMID 25532965›Full record

ArticleParasites & vectors2014

Absence of genetic structure in Baylisascaris schroederi populations, a giant panda parasite, determined by mitochondrial sequencing.

Yue Xie, Xuan Zhou, Zhihe Zhang, Chengdong Wang, Yun Sun, Tianyu Liu, Xiaobin Gu, Tao Wang, Xuerong Peng, Guangyou Yang

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review on parasites of wild and captive giant pandas (International journal for parasitology. Parasites and wildlife · 2020
    Review
  5. Article
  6. Review
  7. Review
  8. Beyond the raccoon roundworm: The natural history of non-raccoonInternational journal for parasitology. Parasites and wildlife · 2017
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Yue XieDepartment of Parasitology, College of Veterinary Medicine, Sichuan Agricultural University, Ya'an, 625014, China. zhandegaokandey123@163.com.
Xuan ZhouCentre for Animal Diseases Control and Prevention, Dachuan Animal Husbandry Bureau, Dazhou, 623000, China. zhouxuan198866@163.com.
Zhihe ZhangChengdu Research Base of Giant Panda Breeding, Chengdu, 610081, China. parasitology513@163.com.
Chengdong WangChengdu Research Base of Giant Panda Breeding, Chengdu, 610081, China. susieconan@vip.qq.com.
Yun SunDepartment of Parasitology, College of Veterinary Medicine, Sichuan Agricultural University, Ya'an, 625014, China. sunyun062@163.com.
Tianyu LiuDepartment of Parasitology, College of Veterinary Medicine, Sichuan Agricultural University, Ya'an, 625014, China. kevinlau1990@hotmail.com.
Xiaobin GuDepartment of Parasitology, College of Veterinary Medicine, Sichuan Agricultural University, Ya'an, 625014, China. guxiaobin198225@126.com.
Tao WangDepartment of Parasitology, College of Veterinary Medicine, Sichuan Agricultural University, Ya'an, 625014, China. wangtao0614@gmail.com.
Xuerong PengDepartment of Chemistry, College of Life and Basic Science, Sichuan Agricultural University, Ya'an, 625014, China. pxuerong@yahoo.com.cn.
Guangyou YangDepartment of Parasitology, College of Veterinary Medicine, Sichuan Agricultural University, Ya'an, 625014, China. guangyou1963@aliyun.com.
Sichuan Agricultural University · CNChengdu Research Base of Giant Panda Breeding · CNAnimal Husbandry & Veterinary · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInfection with the parasitic nematode, Baylisascaris schroederi (Ascaridida: Nematoda), is one of the most important causes of death in giant pandas, and was responsible for half of deaths between 2001 and 2005. Mitochondrial (mt) DNA sequences of parasites can unveil their genetic diversity and depict their likely dynamic evolution and therefore may provide insights into parasite survival and responses to host changes, as well as parasite control.

methodsBased on previous studies, the present study further annotated the genetic variability and structure of B. schroederi populations by combining two different mtDNA markers, ATPase subunit 6 (atp6) and cytochrome c oxidase subunit I (cox1). Both sequences were completely amplified and genetically analyzed among 57 B. schroederi isolates, which were individually collected from ten geographical regions located in three important giant panda habitats in China (Minshan, Qionglai and Qinling mountain ranges).

resultsFor the DNA dataset, we identified 20 haplotypes of atp6, 24 haplotypes of cox1, and 39 haplotypes of atp6 + cox1. Further haplotype network and phylogenetic analyses demonstrated that B. schroederi populations were predominantly driven by three common haplotypes, atp6 A1, cox1 C10, and atp6 + cox1 H11. However, due to low rates of gene differentiation between the three populations, both the atp6 and cox1 genes appeared not to be significantly associated with geographical divisions. In addition, high gene flow was detected among the B. schroederi populations, consistent with previous studies, suggesting that this parasite may be essentially homogenous across endemic areas. Finally, neutrality tests and mismatch analysis indicated that B. schroederi had undergone earlier demographic expansion.

conclusionsThese results confirmed that B. schroederi populations do not follow a pattern of isolation by distance, further revealing the possible existence of physical connections before geographic separation. This study should also contribute to an improved understanding of the population genetics and evolutionary biology of B. schroederi and assist in the control of baylisascariasis in giant pandas.

Indexed as

Genetic VariationAnimalsAscaridida InfectionsAscaridoideaBase SequenceChinaDNA, HelminthDNA, MitochondrialGenetics, PopulationGeographyHaplotypesMitochondriaMolecular Sequence DataPhylogenySequence Analysis, DNAUrsidaeDNA, HelminthDNA, Mitochondrial

Identifiers

PMID25532965
PMCPMC4292857
OpenAlexW2156344361

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.