Evidence map›Paper›PMID 25531891›Full record

ArticleNature chemical biology2015

De novo biosynthesis of terminal alkyne-labeled natural products.

Xuejun Zhu, Joyce Liu, Wenjun Zhang

Abstract read
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In one paragraph

Article in Nature chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 130 citations in OpenAlex.

  1. Article
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  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Biosynthesis of Isonitrile- and Alkyne-Containing Natural Products.Annual review of chemical and biomolecular engineering · 2022
    Review
  15. Selective Para-C-H Alkynylation of Aniline Derivatives by Pd/S,O-Ligand Catalysis.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Pd-catalyzed sp-spChemical communications (Cambridge, England) · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Xuejun Zhu1] Department of Chemical and Biomolecular Engineering, University of California-Berkeley, Berkeley, California, USA. [2] Energy Biosciences Institute, University of California-Berkeley, Berkeley, California, USA.
Joyce Liu1] Energy Biosciences Institute, University of California-Berkeley, Berkeley, California, USA. [2] Department of Bioengineering, University of California-Berkeley, Berkeley, California, USA.
Wenjun Zhang1] Department of Chemical and Biomolecular Engineering, University of California-Berkeley, Berkeley, California, USA. [2] Energy Biosciences Institute, University of California-Berkeley, Berkeley, California, USA. [3] Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
University of California, Berkeley · USEnergy Biosciences Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The terminal alkyne is a functionality widely used in organic synthesis, pharmaceutical science, material science and bioorthogonal chemistry. This functionality is also found in acetylenic natural products, but the underlying biosynthetic pathways for its formation are not well understood. Here we report the characterization of what is to our knowledge the first carrier protein-dependent terminal alkyne biosynthetic machinery in microbes. We further demonstrate that this enzymatic machinery can be exploited for the in situ generation and incorporation of terminal alkynes into two natural product scaffolds in Escherichia coli. These results highlight the prospect for tagging major classes of natural products, including polyketides and polyketide/nonribosomal peptide hybrids, using biosynthetic pathway engineering.

Indexed as

AlkynesBacterial ProteinsBiological ProductsBiosynthetic PathwaysEscherichia coliMolecular Sequence DataOrganisms, Genetically ModifiedPeptide Biosynthesis, Nucleic Acid-IndependentPolyketidesAlkynesBacterial ProteinsBiological ProductsPolyketides

Identifiers

PMID25531891
OpenAlexW2076152087

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.