Evidence map›Paper›PMID 25530503›Full record

ArticleInsect biochemistry and molecular biology2015

Sequence conservation, phylogenetic relationships, and expression profiles of nondigestive serine proteases and serine protease homologs in Manduca sexta.

Xiaolong Cao, Yan He, Yingxia Hu, Xiufeng Zhang, Yang Wang, Zhen Zou, Yunru Chen, Gary W Blissard, Michael R Kanost, Haobo Jiang

Open access · greenAbstract read
In one paragraph

Article in Insect biochemistry and molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 93 citations in OpenAlex.

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  20. Frontiers in immunology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Xiaolong CaoDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK, 74078, USA.
Yan HeDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK, 74078, USA.
Yingxia HuDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK, 74078, USA.
Xiufeng ZhangDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK, 74078, USA.
Yang WangDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK, 74078, USA.
Zhen ZouThe State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, PR China.
Yunru ChenBoyce Thompson Institute, Cornell University, Ithaca, NY, 14853, USA.
Gary W BlissardBoyce Thompson Institute, Cornell University, Ithaca, NY, 14853, USA.
Michael R KanostDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, KS, 66506, USA.
Haobo JiangDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK, 74078, USA. Electronic address: haobo.jiang@okstate.edu.
Oklahoma State University · USCornell University · USInstitute of Zoology · CNKansas State University · US

Funding

Initiation and Regulation of Prophenoloxidase ActivationR01GM058634 · NIGMS · OKLAHOMA STATE UNIVERSITY STILLWATER · PI JIANG, HAOBO · 1999 to 2022
$4.0M
Supplement 2 to promote diversity in health related res.: protease systems in insR37GM041247 · NIGMS · KANSAS STATE UNIVERSITY · PI KANOST, MICHAEL R · 2011 to 2020
$3.8M
SERINE PROTEINASE INHIBITORS IN INSECTSR01GM041247 · NIGMS · KANSAS STATE UNIVERSITY · PI KANOST, MICHAEL R · 1994 to 2010
$3.1M
SERINE PROTEINASE INHIBITORS IN INSECTSR29GM041247 · NIGMS · UNIVERSITY OF ARIZONA · PI KANOST, MICHAEL R. · 1989 to 1993
–
NIGMS NIH HHS GM41247NIGMS NIH HHS GM58634NIGMS NIH HHS R01 GM041247NIGMS NIH HHS R01 GM058634NIGMS NIH HHS R37 GM041247
6 · The paper itself

Abstract

Serine protease (SP) and serine protease homolog (SPH) genes in insects encode a large family of proteins involved in digestion, development, immunity, and other processes. While 68 digestive SPs and their close homologs are reported in a companion paper (Kuwar et al., in preparation), we have identified 125 other SPs/SPHs in Manduca sexta and studied their structure, evolution, and expression. Fifty-two of them contain cystine-stabilized structures for molecular recognition, including clip, LDLa, Sushi, Wonton, TSP, CUB, Frizzle, and SR domains. There are nineteen groups of genes evolved from relatively recent gene duplication and sequence divergence. Thirty-five SPs and seven SPHs contain 1, 2 or 5 clip domains. Multiple sequence alignment and molecular modeling of the 54 clip domains have revealed structural diversity of these regulatory modules. Sequence comparison with their homologs in Drosophila melanogaster, Anopheles gambiae and Tribolium castaneum allows us to classify them into five subfamilies: A are SPHs with 1 or 5 group-3 clip domains, B are SPs with 1 or 2 group-2 clip domains, C, D1 and D2 are SPs with a single clip domain in group-1a, 1b and 1c, respectively. We have classified into six categories the 125 expression profiles of SP-related proteins in fat body, brain, midgut, Malpighian tubule, testis, and ovary at different stages, suggesting that they participate in various physiological processes. Through RNA-Seq-based gene annotation and expression profiling, as well as intragenomic sequence comparisons, we have established a framework of information for future biochemical research of nondigestive SPs and SPHs in this model species.

Indexed as

PhylogenyTranscriptomeAmino Acid SequenceAnimalsConserved SequenceInsect ProteinsManducaModels, MolecularProtein ConformationRNA, MessengerSequence AlignmentSequence Analysis, RNASerine ProteasesSpecies SpecificityInsect ProteinsRNA, MessengerSerine ProteasesClip domainHemolymph proteinInsect immunityPhylogenetic analysisRNA-Seq

Identifiers

PMID25530503
PMCPMC4474797
OpenAlexW2015631799

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.