Evidence map›Paper›PMID 25528559›Full record

ArticleBMC developmental biology2014

Generation of cell type-specific monoclonal antibodies for the planarian and optimization of sample processing for immunolabeling.

David J Forsthoefel, Forrest A Waters, Phillip A Newmark

Open access · hybridAbstract read
In one paragraph

Article in BMC developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. mCell proliferation · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. RNAi Screening to Assess Tissue Regeneration in Planarians.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Article
  10. Article
  11. CaCold Spring Harbor perspectives in biology · 2019
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Surgical Ablation Assay for Studying Eye Regeneration in Planarians.Journal of visualized experiments : JoVE · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

David J ForsthoefelHoward Hughes Medical Institute, Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, B107 Chemical and Life Sciences Laboratory, 601 S. Goodwin Ave., Urbana, IL, 61801, USA. davef@life.illinois.edu.
Forrest A WatersHoward Hughes Medical Institute, Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, B107 Chemical and Life Sciences Laboratory, 601 S. Goodwin Ave., Urbana, IL, 61801, USA. forrest__waters@hotmail.com.
Phillip A NewmarkHoward Hughes Medical Institute, Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, B107 Chemical and Life Sciences Laboratory, 601 S. Goodwin Ave., Urbana, IL, 61801, USA. pnewmark@life.illinois.edu.
Howard Hughes Medical Institute · USUniversity of Illinois Urbana-Champaign · US

Funding

Stem cell proliferation and differentiation in planariaR01HD043403 · NICHD · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI Phillip A Newmark · 2003 to 2026
$5.1M
Stem cell-based renewal and regeneration in the intestine of a model organismF32DK077469 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI FORSTHOEFEL, DAVID J · 2006 to 2009
$146k
Howard Hughes Medical InstituteNICHD NIH HHS R01 HD043403NICHD NIH HHS R01-HD043403NIDDK NIH HHS F32 DK077469NIDDK NIH HHS F32-DK077469
6 · The paper itself

Abstract

backgroundEfforts to elucidate the cellular and molecular mechanisms of regeneration have required the application of methods to detect specific cell types and tissues in a growing cohort of experimental animal models. For example, in the planarian Schmidtea mediterranea, substantial improvements to nucleic acid hybridization and electron microscopy protocols have facilitated the visualization of regenerative events at the cellular level. By contrast, immunological resources have been slower to emerge. Specifically, the repertoire of antibodies recognizing planarian antigens remains limited, and a more systematic approach is needed to evaluate the effects of processing steps required during sample preparation for immunolabeling.

resultsTo address these issues and to facilitate studies of planarian digestive system regeneration, we conducted a monoclonal antibody (mAb) screen using phagocytic intestinal cells purified from the digestive tracts of living planarians as immunogens. This approach yielded ten antibodies that recognized intestinal epitopes, as well as markers for the central nervous system, musculature, secretory cells, and epidermis. In order to improve signal intensity and reduce non-specific background for a subset of mAbs, we evaluated the effects of fixation and other steps during sample processing. We found that fixative choice, treatments to remove mucus and bleach pigment, as well as methods for tissue permeabilization and antigen retrieval profoundly influenced labeling by individual antibodies. These experiments led to the development of a step-by-step workflow for determining optimal specimen preparation for labeling whole planarians as well as unbleached histological sections.

conclusionsWe generated a collection of monoclonal antibodies recognizing the planarian intestine and other tissues; these antibodies will facilitate studies of planarian tissue morphogenesis. We also developed a protocol for optimizing specimen processing that will accelerate future efforts to generate planarian-specific antibodies, and to extend functional genetic studies of regeneration to post-transcriptional aspects of gene expression, such as protein localization or modification. Our efforts demonstrate the importance of systematically testing multiple approaches to species-specific idiosyncracies, such as mucus removal and pigment bleaching, and may serve as a template for the development of immunological resources in other emerging model organisms.

Indexed as

AnimalsAntibodies, Monoclonal, Murine-DerivedFemaleFixativesFluorescent Antibody Technique, IndirectFormaldehydeHelminth ProteinsIntestinesMiceMice, Inbred BALB COrgan SpecificityPhagocytesPlanariansTissue FixationAntibodies, Monoclonal, Murine-DerivedFixativesFormaldehydeHelminth Proteins

Identifiers

PMID25528559
PMCPMC4299570
OpenAlexW2043351969

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.