Evidence map›Paper›PMID 25527707›Full record

ArticleThe Plant cell2014

The root hair "infectome" of Medicago truncatula uncovers changes in cell cycle genes and reveals a requirement for Auxin signaling in rhizobial infection.

Andrew Breakspear, Chengwu Liu, Sonali Roy, Nicola Stacey, Christian Rogers, Martin Trick, Giulia Morieri, Kirankumar S Mysore, Jiangqi Wen, Giles E D Oldroyd and 2 more

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 181 papers.

0numbers the graph read from it
0cells of the map it votes in
181citing papers in PubMed
40.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

181 citing papers in PubMed, 372 citations in OpenAlex.

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  18. Genome-Wide Identification and Expression Analyses ofInternational journal of molecular sciences · 2025
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  19. Function of Nodulation-Associated GmNARK Kinase in Soybean Alkali Tolerance.International journal of molecular sciences · 2025
    Article
  20. Review

121 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Andrew BreakspearCell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Chengwu LiuCell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Sonali RoyCell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Nicola StaceyCell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Christian RogersCell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Martin TrickComputational and Systems Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Giulia MorieriDepartment of Molecular Microbiology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Kirankumar S MysoreDivision of Plant Biology, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma 73401.
Jiangqi WenDivision of Plant Biology, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma 73401.
Giles E D OldroydCell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
J Allan DownieDepartment of Molecular Microbiology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Jeremy D MurrayCell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom jeremy.murray@jic.ac.uk.ORCID http://orcid.org/0000-0003-3000-9199
John Innes Centre · GBNoble Research Institute · US

Funding

Biotechnology and Biological Sciences Research Council BB/G023832/1Biotechnology and Biological Sciences Research Council BB/L010305/1Biotechnology and Biological Sciences Research Council BBS/E/J/00000012Biotechnology and Biological Sciences Research Council BBS/E/J/00000603Biotechnology and Biological Sciences Research Council BBS/E/J/000CA282
6 · The paper itself

Abstract

Nitrogen-fixing rhizobia colonize legume roots via plant-made intracellular infection threads. Genetics has identified some genes involved but has not provided sufficient detail to understand requirements for infection thread development. Therefore, we transcriptionally profiled Medicago truncatula root hairs prior to and during the initial stages of infection. This revealed changes in the responses to plant hormones, most notably auxin, strigolactone, gibberellic acid, and brassinosteroids. Several auxin responsive genes, including the ortholog of Arabidopsis thaliana Auxin Response Factor 16, were induced at infection sites and in nodule primordia, and mutation of ARF16a reduced rhizobial infection. Associated with the induction of auxin signaling genes, there was increased expression of cell cycle genes including an A-type cyclin and a subunit of the anaphase promoting complex. There was also induction of several chalcone O-methyltransferases involved in the synthesis of an inducer of Sinorhizobium meliloti nod genes, as well as a gene associated with Nod factor degradation, suggesting both positive and negative feedback loops that control Nod factor levels during rhizobial infection. We conclude that the onset of infection is associated with reactivation of the cell cycle as well as increased expression of genes required for hormone and flavonoid biosynthesis and that the regulation of auxin signaling is necessary for initiation of rhizobial infection threads.

Indexed as

Cell Cycle ProteinsEvolution, MolecularGlycine maxHost-Pathogen InteractionsIndoleacetic AcidsMedicago truncatulaPhylogenyPlant RootsRhizobiumSignal TransductionSymbiosisCell Cycle ProteinsIndoleacetic Acids

Identifiers

PMID25527707
PMCPMC4311213
OpenAlexW2102942796

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.