Evidence map›Paper›PMID 25527085›Full record

ArticleRetrovirology2014

Detailed characterization of antibody responses against HIV-1 group M consensus gp120 in rabbits.

Yali Qin, Heliang Shi, Saikat Banerjee, Aditi Agrawal, Marisa Banasik, Michael W Cho

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yali QinDepartment of Biomedical Sciences, College of Veterinary Medicine, Iowa State University, 1600 S 16th Street, Ames, IA, 50011-1250, USA. yaliq@hotmail.com.
Heliang ShiDepartment of Biomedical Sciences, College of Veterinary Medicine, Iowa State University, 1600 S 16th Street, Ames, IA, 50011-1250, USA. shiyxtox@iastate.edu.
Saikat BanerjeeDepartment of Biomedical Sciences, College of Veterinary Medicine, Iowa State University, 1600 S 16th Street, Ames, IA, 50011-1250, USA. skt3187@iastate.edu.
Aditi AgrawalDepartment of Biomedical Sciences, College of Veterinary Medicine, Iowa State University, 1600 S 16th Street, Ames, IA, 50011-1250, USA. aditiag@iastate.edu.
Marisa BanasikDepartment of Biomedical Sciences, College of Veterinary Medicine, Iowa State University, 1600 S 16th Street, Ames, IA, 50011-1250, USA. mbanasik@iastate.edu.
Michael W ChoDepartment of Biomedical Sciences, College of Veterinary Medicine, Iowa State University, 1600 S 16th Street, Ames, IA, 50011-1250, USA. mcho@iastate.edu.
Iowa State University · US

Funding

Structural Evaluation of HIV-1 Envelope GycoproteinP01AI074286 · NIAID · IOWA STATE UNIVERSITY · PI SHI, WUXIAN · 2008 to 2012
$5.0M
NIAID NIH HHS P01 AI074286NIAID NIH HHS P01AI074286
6 · The paper itself

Abstract

backgroundWe recently reported induction of broadly neutralizing antibodies (bnAbs) against multiple HIV-1 (human immunodeficiency virus type 1) isolates in rabbits, albeit weak against tier 2 viruses, using a monomeric gp120 derived from an M group consensus sequence (MCON6). To better understand the nature of the neutralizing activity, detailed characterization of immunological properties of the protein was performed. Immunogenic linear epitopes were identified during the course of immunization, and spatial distribution of these epitopes was determined. Subdomain antibody target analyses were done using the gp120 outer domain (gp120-OD) and eOD-GT6, a protein based on a heterologous sequence. In addition, refined epitope mapping analyses were done by competition assays using several nAbs with known epitopes.

resultsBased on linear epitope mapping analyses, the V3 loop was most immunogenic, followed by C1 and C5 regions. The V1/V2 loop was surprisingly non-immunogenic. Many immunogenic epitopes were clustered together even when they were distantly separated in primary sequence, suggesting the presence of immunogenic hotspots on the protein surface. Although substantial antibody responses were directed against the outer domain, only about 0.1% of the antibodies bound eOD-GT6. Albeit weak, antibodies against peptides that corresponded to a part of the bnAb VRC01 binding site were detected. Although gp120-induced antibodies could not block VRC01 binding to eOD-GT6, they were able to inhibit VRC01 binding to both gp120 and trimeric BG505 SOSIP gp140. The immune sera also efficiently competed with CD4-IgG2, as well as nAbs 447-52D, PGT121 and PGT126, in binding to gp120.

conclusionsThe results suggest that some antibodies that bind at or near known bnAb epitopes could be partly responsible for the breadth of neutralizing activity induced by gp120 in our study. Immunization strategies that enhance induction of these antibodies relative to others (e.g. V3 loop), and increase their affinity, could improve protective efficacy of an HIV-1 vaccine.

Indexed as

Antibody FormationAnimalsAntibodies, NeutralizingEpitope MappingEpitopesHIV-1HIV AntibodiesHIV Envelope Protein gp120RabbitsAntibodies, NeutralizingEpitopesgp120 protein, Human immunodeficiency virus 1HIV AntibodiesHIV Envelope Protein gp120

Identifiers

PMID25527085
PMCPMC4300834
OpenAlexW2152990646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.