Evidence map›Paper›PMID 25526306›Full record

ArticleImmunity2014

Antibody light-chain-restricted recognition of the site of immune pressure in the RV144 HIV-1 vaccine trial is phylogenetically conserved.

Kevin Wiehe, David Easterhoff, Kan Luo, Nathan I Nicely, Todd Bradley, Frederick H Jaeger, S Moses Dennison, Ruijun Zhang, Krissey E Lloyd, Christina Stolarchuk and 22 more

Open access · bronzeAbstract read
In one paragraph

Article in Immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 72 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 11 institutions in 3 countries.

Kevin WieheDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA. Electronic address: kevin.wiehe@dm.duke.edu.
David EasterhoffDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Kan LuoDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Nathan I NicelyDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Todd BradleyDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Frederick H JaegerDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
S Moses DennisonDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Ruijun ZhangDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Krissey E LloydDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Christina StolarchukDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Robert ParksDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Laura L SutherlandDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Richard M ScearceDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Lynn MorrisNational Institute for Communicable Diseases, Johannesburg 2131, SA and the Centre for the AIDS Programme of Research in South Africa (CAPRISA).
Jaranit KaewkungwalDepartment of Tropical Medicine, Mahidol University, Bangkok 10400, Thailand.
Sorachai NitayaphanArmed Forces Research Institute of Medical Sciences (AFRIMS), Bangkok 10400, Thailand.
Punnee PitisuttithumDepartment of Tropical Medicine, Mahidol University, Bangkok 10400, Thailand.
Supachai Rerks-NgarmDepartment of Disease Control, Ministry of Public Health, Nonthaburi 11000, Thailand.
Faruk SinangilSanofi Pasteur, Inc., Swiftwater, PA 18370, USA.
Sanjay PhogatGlobal Solutions for Infectious Diseases, South San Francisco, CA 94080, USA.
Nelson L MichaelUS Military Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA.
Jerome H KimUS Military Research Program, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA.
Garnett KelsoeDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
David C MontefioriDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Georgia D TomarasDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Mattia BonsignoriDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Sampa SantraBeth Israel Deaconess Medical Center, Harvard University School of Medicine, Boston, MA 02215, USA.
Thomas B KeplerDepartment of Microbiology, Boston University, Boston, MA 02118, USA.
S Munir AlamDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
M Anthony MoodyDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Hua-Xin LiaoDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.
Barton F HaynesDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA. Electronic address: barton.haynes@dm.duke.edu.
Duke University · USWalter Reed Army Institute of Research · USArmed Forces Research Institute of Medical Science · THBoston University · USCentre for the AIDS Programme of Research in South Africa · ZAGlobal Solutions for Infectious Diseases · USHarvard University · USMahidol Oxford Tropical Medicine Research Unit · THMahidol University · THMinistry of Public Health · THSanofi (United States) · US

Funding

Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI SANTRA, SAMPA · 2012 to 2018
$204.7M
Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Susanna Naggie, GEORGIA Doris TOMARAS · 2005 to 2026
$50.5M
Ruth L. Kirschstein National Research Service Award (NRSA)- T32T32AI007392 · NIAID · DUKE UNIVERSITY · PI Amy Lynn Corneli, Guido Ferrari · 1990 to 2026
$9.8M
NIAID NIH HHS 5T32-AI007392NIAID NIH HHS P30 AI064518NIAID NIH HHS P30-AI-64518NIAID NIH HHS T32 AI007392NIAID NIH HHS UM1 AI100645NIAID NIH HHS UMI-AI100645
6 · The paper itself

Abstract

In HIV-1, the ability to mount antibody responses to conserved, neutralizing epitopes is critical for protection. Here we have studied the light chain usage of human and rhesus macaque antibodies targeted to a dominant region of the HIV-1 envelope second variable (V2) region involving lysine (K) 169, the site of immune pressure in the RV144 vaccine efficacy trial. We found that humans and rhesus macaques used orthologous lambda variable gene segments encoding a glutamic acid-aspartic acid (ED) motif for K169 recognition. Structure determination of an unmutated ancestor antibody demonstrated that the V2 binding site was preconfigured for ED motif-mediated recognition prior to maturation. Thus, light chain usage for recognition of the site of immune pressure in the RV144 trial is highly conserved across species. These data indicate that the HIV-1 K169-recognizing ED motif has persisted over the diversification between rhesus macaques and humans, suggesting an evolutionary advantage of this antibody recognition mode.

Indexed as

AIDS VaccinesAmino Acid SequenceAnimalsAntibodies, ViralAntibody AffinityB-LymphocytesCells, CulturedClinical Trials as TopicConserved SequenceEpitope MappingEpitopes, B-LymphocyteHIV-1HIV Envelope Protein gp120HIV InfectionsHumansImmunoglobulin Light ChainsAIDS VaccinesAntibodies, ViralEpitopes, B-Lymphocytegp120 protein, Human immunodeficiency virus 1HIV Envelope Protein gp120Immunoglobulin Light Chains

Identifiers

PMID25526306
PMCPMC4324565
OpenAlexW2115529785

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.